Hb_007044_130

Information

Type -
Description -
Location Contig7044: 101753-105134
Sequence    

Annotation

kegg
ID rcu:RCOM_0596990
description Proteasome maturation protein, putative
nr
ID XP_012077931.1
description PREDICTED: cyclin-B1-2 [Jatropha curcas]
swissprot
ID Q0DWQ7
description Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1
trembl
ID A0A067K9Y0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12958 PE=4 SV=1
Gene Ontology
ID GO:0000502
description cyclin-b1-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55027: 101812-105127
cDNA
(Sanger)
(ID:Location)		 002_D03.ab1: 101812-105126 , 018_E19.ab1: 101815-105078 , 019_D05.ab1: 101812-105059 , 019_H12.ab1: 101812-105059 , 041_C09.ab1: 101812-105060 , 044_C14.ab1: 101812-105060 , 048_O04.ab1: 101812-105060 , 051_H15.ab1: 101812-105053

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_130 0.0 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
2 Hb_002783_270 0.0560786435 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
3 Hb_001141_140 0.0641012756 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
4 Hb_000260_550 0.0666331832 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
5 Hb_000062_650 0.069108341 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
6 Hb_003894_070 0.0756047912 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
7 Hb_006925_040 0.0767194841 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
8 Hb_000506_070 0.077914613 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
9 Hb_003058_080 0.0828824852 - - Chaperonin 10 isoform 1 [Theobroma cacao]
10 Hb_000046_560 0.0847773893 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
11 Hb_000096_170 0.0853849809 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]
12 Hb_003185_110 0.0896013979 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
13 Hb_047823_010 0.089916262 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
14 Hb_002768_030 0.0902891734 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
15 Hb_003641_020 0.0911768164 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
16 Hb_004223_040 0.0911922377 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
17 Hb_000735_040 0.0913080702 - - 60S ribosomal protein L32A [Hevea brasiliensis]
18 Hb_003226_100 0.0914024621 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
19 Hb_001341_090 0.0922144351 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
20 Hb_002900_160 0.0923522196 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007044_130 Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_007044_130--Hb_002783_270 Hb_001141_140 Hb_001141_140 Hb_007044_130--Hb_001141_140 Hb_000260_550 Hb_000260_550 Hb_007044_130--Hb_000260_550 Hb_000062_650 Hb_000062_650 Hb_007044_130--Hb_000062_650 Hb_003894_070 Hb_003894_070 Hb_007044_130--Hb_003894_070 Hb_006925_040 Hb_006925_040 Hb_007044_130--Hb_006925_040 Hb_000046_560 Hb_000046_560 Hb_002783_270--Hb_000046_560 Hb_002783_270--Hb_006925_040 Hb_002783_270--Hb_003894_070 Hb_003058_080 Hb_003058_080 Hb_002783_270--Hb_003058_080 Hb_001341_090 Hb_001341_090 Hb_002783_270--Hb_001341_090 Hb_001141_140--Hb_006925_040 Hb_000735_040 Hb_000735_040 Hb_001141_140--Hb_000735_040 Hb_010175_040 Hb_010175_040 Hb_001141_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001141_140--Hb_003226_100 Hb_003018_020 Hb_003018_020 Hb_001141_140--Hb_003018_020 Hb_000096_170 Hb_000096_170 Hb_000260_550--Hb_000096_170 Hb_004453_170 Hb_004453_170 Hb_000260_550--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_000506_070 Hb_000506_070 Hb_000062_650--Hb_000506_070 Hb_008921_020 Hb_008921_020 Hb_000062_650--Hb_008921_020 Hb_003641_020 Hb_003641_020 Hb_000062_650--Hb_003641_020 Hb_000062_650--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000062_650--Hb_002588_010 Hb_014720_040 Hb_014720_040 Hb_003894_070--Hb_014720_040 Hb_003894_070--Hb_001341_090 Hb_005045_060 Hb_005045_060 Hb_003894_070--Hb_005045_060 Hb_000836_470 Hb_000836_470 Hb_003894_070--Hb_000836_470 Hb_006925_040--Hb_000046_560 Hb_003053_010 Hb_003053_010 Hb_006925_040--Hb_003053_010 Hb_000996_140 Hb_000996_140 Hb_006925_040--Hb_000996_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
148.647 58.4441 162.309 127.984 126.535 110.222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
187.302 492.634 123.648 79.999 52.8472

CAGE analysis