Hb_007044_140

Information

Type -
Description -
Location Contig7044: 106490-111384
Sequence    

Annotation

kegg
ID pop:POPTR_0004s10350g
description POPTRDRAFT_714386; hypothetical protein
nr
ID XP_012077932.1
description PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
swissprot
ID Q9UI10
description Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2
trembl
ID A0A067KD24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12959 PE=3 SV=1
Gene Ontology
ID GO:0003743
description translation initiation factor eif-2b subunit delta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55029: 106781-107027 , PASA_asmbl_55030: 107028-108940 , PASA_asmbl_55031: 108967-110518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_140 0.0 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
2 Hb_002016_110 0.0753931043 - - transducin family protein [Populus trichocarpa]
3 Hb_006400_060 0.0776365262 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
4 Hb_000011_200 0.0784157756 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
5 Hb_001009_170 0.07985359 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
6 Hb_001199_020 0.0806726065 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
7 Hb_000028_480 0.0817212611 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
8 Hb_007426_030 0.0818839027 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
9 Hb_007441_120 0.0826995155 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
10 Hb_001006_140 0.0830034491 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
11 Hb_000483_200 0.083546557 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_002271_030 0.0842848963 - - Vacuolar protein sorting protein, putative [Ricinus communis]
13 Hb_027472_150 0.0845715631 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
14 Hb_000264_170 0.0848978791 - - PREDICTED: uncharacterized protein LOC105649522 [Jatropha curcas]
15 Hb_004032_150 0.0855705108 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
16 Hb_001198_100 0.0870362342 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
17 Hb_000808_230 0.0870512437 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
18 Hb_000577_010 0.0871974587 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
19 Hb_004055_030 0.0878435964 - - casein kinase, putative [Ricinus communis]
20 Hb_004994_220 0.0887533766 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007044_140 Hb_007044_140 Hb_002016_110 Hb_002016_110 Hb_007044_140--Hb_002016_110 Hb_006400_060 Hb_006400_060 Hb_007044_140--Hb_006400_060 Hb_000011_200 Hb_000011_200 Hb_007044_140--Hb_000011_200 Hb_001009_170 Hb_001009_170 Hb_007044_140--Hb_001009_170 Hb_001199_020 Hb_001199_020 Hb_007044_140--Hb_001199_020 Hb_000028_480 Hb_000028_480 Hb_007044_140--Hb_000028_480 Hb_006915_050 Hb_006915_050 Hb_002016_110--Hb_006915_050 Hb_002026_180 Hb_002026_180 Hb_002016_110--Hb_002026_180 Hb_007441_120 Hb_007441_120 Hb_002016_110--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_002016_110--Hb_005663_060 Hb_189003_080 Hb_189003_080 Hb_002016_110--Hb_189003_080 Hb_000030_300 Hb_000030_300 Hb_002016_110--Hb_000030_300 Hb_000483_200 Hb_000483_200 Hb_006400_060--Hb_000483_200 Hb_000808_230 Hb_000808_230 Hb_006400_060--Hb_000808_230 Hb_003032_040 Hb_003032_040 Hb_006400_060--Hb_003032_040 Hb_002079_010 Hb_002079_010 Hb_006400_060--Hb_002079_010 Hb_006400_060--Hb_002016_110 Hb_006400_030 Hb_006400_030 Hb_006400_060--Hb_006400_030 Hb_000225_040 Hb_000225_040 Hb_000011_200--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000011_200--Hb_000193_190 Hb_004410_030 Hb_004410_030 Hb_000011_200--Hb_004410_030 Hb_003158_010 Hb_003158_010 Hb_000011_200--Hb_003158_010 Hb_006827_020 Hb_006827_020 Hb_000011_200--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000011_200--Hb_007317_110 Hb_005490_030 Hb_005490_030 Hb_001009_170--Hb_005490_030 Hb_004920_120 Hb_004920_120 Hb_001009_170--Hb_004920_120 Hb_001959_210 Hb_001959_210 Hb_001009_170--Hb_001959_210 Hb_011671_180 Hb_011671_180 Hb_001009_170--Hb_011671_180 Hb_001619_070 Hb_001619_070 Hb_001009_170--Hb_001619_070 Hb_000058_100 Hb_000058_100 Hb_001199_020--Hb_000058_100 Hb_001006_140 Hb_001006_140 Hb_001199_020--Hb_001006_140 Hb_004724_200 Hb_004724_200 Hb_001199_020--Hb_004724_200 Hb_001199_020--Hb_007441_120 Hb_006922_100 Hb_006922_100 Hb_001199_020--Hb_006922_100 Hb_004055_030 Hb_004055_030 Hb_001199_020--Hb_004055_030 Hb_002518_260 Hb_002518_260 Hb_000028_480--Hb_002518_260 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_000792_010 Hb_000792_010 Hb_000028_480--Hb_000792_010 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.0537 16.0547 12.0752 14.394 25.7369 37.5085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.3512 21.7477 34.184 26.0587 19.3993

CAGE analysis