Hb_007044_210

Information

Type transcription factor
Description TF Family: MYB
Location Contig7044: 181335-182372
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13950g
description hypothetical protein
nr
ID XP_011021205.1
description PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
swissprot
ID O80931
description Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1
trembl
ID B9N208
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s13950g PE=4 SV=1
Gene Ontology
ID GO:0005488
description protein rough sheath 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_210 0.0 transcription factor TF Family: MYB PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
2 Hb_004724_140 0.1806961689 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
3 Hb_000548_030 0.1847413329 rubber biosynthesis Gene Name: CPT5 PREDICTED: dehydrodolichyl diphosphate synthase 6-like [Beta vulgaris subsp. vulgaris]
4 Hb_001386_130 0.1850078859 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
5 Hb_000373_290 0.1909845429 - - RecName: Full=Citrate-binding protein; Flags: Precursor [Hevea brasiliensis]
6 Hb_000481_020 0.1930375487 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
7 Hb_002681_040 0.193699825 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
8 Hb_027380_040 0.1977359228 - - hypothetical protein B456_011G046500, partial [Gossypium raimondii]
9 Hb_000032_240 0.1997566473 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000680_150 0.2001447552 - - PREDICTED: protein STU1-like [Jatropha curcas]
11 Hb_000959_360 0.2004689323 - - transporter, putative [Ricinus communis]
12 Hb_124315_040 0.2051481285 - - hypothetical protein 19 [Hevea brasiliensis]
13 Hb_010883_210 0.2054175106 - - PREDICTED: selenoprotein K [Jatropha curcas]
14 Hb_001109_120 0.2067043749 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
15 Hb_001623_240 0.2115321506 - - hypothetical protein VITISV_004933 [Vitis vinifera]
16 Hb_000641_030 0.2124077414 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
17 Hb_004286_040 0.2172164439 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
18 Hb_003018_110 0.2193111918 - - -
19 Hb_005545_030 0.2195417015 - - PREDICTED: uncharacterized protein LOC105645697 [Jatropha curcas]
20 Hb_006120_200 0.2206783597 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]

Gene co-expression network

sample Hb_007044_210 Hb_007044_210 Hb_004724_140 Hb_004724_140 Hb_007044_210--Hb_004724_140 Hb_000548_030 Hb_000548_030 Hb_007044_210--Hb_000548_030 Hb_001386_130 Hb_001386_130 Hb_007044_210--Hb_001386_130 Hb_000373_290 Hb_000373_290 Hb_007044_210--Hb_000373_290 Hb_000481_020 Hb_000481_020 Hb_007044_210--Hb_000481_020 Hb_002681_040 Hb_002681_040 Hb_007044_210--Hb_002681_040 Hb_001623_240 Hb_001623_240 Hb_004724_140--Hb_001623_240 Hb_003777_180 Hb_003777_180 Hb_004724_140--Hb_003777_180 Hb_002529_100 Hb_002529_100 Hb_004724_140--Hb_002529_100 Hb_004116_080 Hb_004116_080 Hb_004724_140--Hb_004116_080 Hb_011931_050 Hb_011931_050 Hb_004724_140--Hb_011931_050 Hb_001341_130 Hb_001341_130 Hb_004724_140--Hb_001341_130 Hb_003304_050 Hb_003304_050 Hb_000548_030--Hb_003304_050 Hb_000641_030 Hb_000641_030 Hb_000548_030--Hb_000641_030 Hb_100414_010 Hb_100414_010 Hb_000548_030--Hb_100414_010 Hb_000139_330 Hb_000139_330 Hb_000548_030--Hb_000139_330 Hb_000959_360 Hb_000959_360 Hb_000548_030--Hb_000959_360 Hb_003654_010 Hb_003654_010 Hb_000548_030--Hb_003654_010 Hb_000680_150 Hb_000680_150 Hb_001386_130--Hb_000680_150 Hb_000590_090 Hb_000590_090 Hb_001386_130--Hb_000590_090 Hb_004813_010 Hb_004813_010 Hb_001386_130--Hb_004813_010 Hb_001514_020 Hb_001514_020 Hb_001386_130--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_001386_130--Hb_001493_100 Hb_116701_020 Hb_116701_020 Hb_001386_130--Hb_116701_020 Hb_000920_140 Hb_000920_140 Hb_000373_290--Hb_000920_140 Hb_001195_580 Hb_001195_580 Hb_000373_290--Hb_001195_580 Hb_023988_020 Hb_023988_020 Hb_000373_290--Hb_023988_020 Hb_000373_290--Hb_000641_030 Hb_005271_170 Hb_005271_170 Hb_000373_290--Hb_005271_170 Hb_019516_040 Hb_019516_040 Hb_000373_290--Hb_019516_040 Hb_000481_020--Hb_003777_180 Hb_007766_010 Hb_007766_010 Hb_000481_020--Hb_007766_010 Hb_000184_040 Hb_000184_040 Hb_000481_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000481_020--Hb_006120_200 Hb_002681_020 Hb_002681_020 Hb_000481_020--Hb_002681_020 Hb_007919_050 Hb_007919_050 Hb_000481_020--Hb_007919_050 Hb_001405_050 Hb_001405_050 Hb_002681_040--Hb_001405_050 Hb_010449_020 Hb_010449_020 Hb_002681_040--Hb_010449_020 Hb_005545_030 Hb_005545_030 Hb_002681_040--Hb_005545_030 Hb_000768_050 Hb_000768_050 Hb_002681_040--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_002681_040--Hb_003688_100 Hb_002681_040--Hb_000680_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7832 0.803878 0.422171 3.77572 5.9022 2.66214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9353 6.58384 1.82564 1.46793 0.234175

CAGE analysis