Hb_007044_220

Information

Type -
Description -
Location Contig7044: 192702-194543
Sequence    

Annotation

kegg
ID rcu:RCOM_0015290
description Allene oxide cyclase 4, chloroplast precursor, putative (EC:5.3.99.6)
nr
ID XP_002530384.1
description Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9LS01
description Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1
trembl
ID B9SWL5
description Allene oxide cyclase 4, chloroplast, putative OS=Ricinus communis GN=RCOM_0015290 PE=4 SV=1
Gene Ontology
ID GO:0009507
description allene oxide cyclase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55035: 192785-194550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_220 0.0 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
2 Hb_003875_040 0.1402151132 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
3 Hb_127416_010 0.145514915 - - LysM domain GPI-anchored protein 2 precursor, putative [Ricinus communis]
4 Hb_000028_490 0.1457802991 - - calmodulin-like protein 6a [Populus trichocarpa]
5 Hb_005839_030 0.1545936482 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
6 Hb_183086_070 0.15937298 - - PREDICTED: mitochondrial chaperone BCS1-like [Jatropha curcas]
7 Hb_002592_050 0.1647008212 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
8 Hb_164926_040 0.1684035959 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
9 Hb_013358_030 0.1713495385 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
10 Hb_005333_080 0.1718079755 - - conserved hypothetical protein [Ricinus communis]
11 Hb_023278_030 0.172025475 - - zinc finger protein, putative [Ricinus communis]
12 Hb_006483_060 0.174512879 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
13 Hb_005694_180 0.1751753254 - - PREDICTED: cytochrome b5 [Jatropha curcas]
14 Hb_002119_040 0.1774413113 - - receptor protein kinase, putative [Ricinus communis]
15 Hb_000997_240 0.177826356 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
16 Hb_032208_050 0.1781004008 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
17 Hb_002999_080 0.1785076325 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
18 Hb_000866_320 0.1797473485 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_002518_090 0.181366561 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
20 Hb_000307_220 0.1843003091 - - oxidoreductase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007044_220 Hb_007044_220 Hb_003875_040 Hb_003875_040 Hb_007044_220--Hb_003875_040 Hb_127416_010 Hb_127416_010 Hb_007044_220--Hb_127416_010 Hb_000028_490 Hb_000028_490 Hb_007044_220--Hb_000028_490 Hb_005839_030 Hb_005839_030 Hb_007044_220--Hb_005839_030 Hb_183086_070 Hb_183086_070 Hb_007044_220--Hb_183086_070 Hb_002592_050 Hb_002592_050 Hb_007044_220--Hb_002592_050 Hb_013358_030 Hb_013358_030 Hb_003875_040--Hb_013358_030 Hb_146901_020 Hb_146901_020 Hb_003875_040--Hb_146901_020 Hb_000631_100 Hb_000631_100 Hb_003875_040--Hb_000631_100 Hb_001776_070 Hb_001776_070 Hb_003875_040--Hb_001776_070 Hb_005357_120 Hb_005357_120 Hb_003875_040--Hb_005357_120 Hb_027556_060 Hb_027556_060 Hb_003875_040--Hb_027556_060 Hb_023278_030 Hb_023278_030 Hb_127416_010--Hb_023278_030 Hb_127416_010--Hb_183086_070 Hb_000002_350 Hb_000002_350 Hb_127416_010--Hb_000002_350 Hb_012760_090 Hb_012760_090 Hb_127416_010--Hb_012760_090 Hb_127416_010--Hb_000028_490 Hb_001780_030 Hb_001780_030 Hb_000028_490--Hb_001780_030 Hb_000028_490--Hb_183086_070 Hb_005333_080 Hb_005333_080 Hb_000028_490--Hb_005333_080 Hb_000032_250 Hb_000032_250 Hb_000028_490--Hb_000032_250 Hb_005839_030--Hb_002592_050 Hb_000696_030 Hb_000696_030 Hb_005839_030--Hb_000696_030 Hb_001157_190 Hb_001157_190 Hb_005839_030--Hb_001157_190 Hb_005144_080 Hb_005144_080 Hb_005839_030--Hb_005144_080 Hb_011129_020 Hb_011129_020 Hb_005839_030--Hb_011129_020 Hb_004079_100 Hb_004079_100 Hb_005839_030--Hb_004079_100 Hb_002284_080 Hb_002284_080 Hb_183086_070--Hb_002284_080 Hb_003710_020 Hb_003710_020 Hb_183086_070--Hb_003710_020 Hb_080477_080 Hb_080477_080 Hb_183086_070--Hb_080477_080 Hb_003050_100 Hb_003050_100 Hb_002592_050--Hb_003050_100 Hb_032208_050 Hb_032208_050 Hb_002592_050--Hb_032208_050 Hb_155444_010 Hb_155444_010 Hb_002592_050--Hb_155444_010 Hb_002025_050 Hb_002025_050 Hb_002592_050--Hb_002025_050 Hb_001178_090 Hb_001178_090 Hb_002592_050--Hb_001178_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.86845 8.11254 21.2244 34.3236 0.328672 0.282127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64164 1.60418 2.2347 22.2248 2.72433

CAGE analysis