Hb_007044_230

Information

Type -
Description -
Location Contig7044: 196045-199869
Sequence    

Annotation

kegg
ID pop:POPTR_0017s13920g
description hypothetical protein
nr
ID XP_012077936.1
description PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K9M2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12962 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55036: 197285-197522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_230 0.0 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
2 Hb_102269_010 0.0966474606 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
3 Hb_000206_120 0.1114528958 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
4 Hb_010128_120 0.1157428531 - - hypothetical protein JCGZ_23167 [Jatropha curcas]
5 Hb_058702_010 0.1257876524 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
6 Hb_000504_150 0.1307281039 - - PREDICTED: nuclear pore complex protein GP210 [Jatropha curcas]
7 Hb_000029_320 0.1337291965 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
8 Hb_000935_090 0.1361921425 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
9 Hb_000441_180 0.1381457244 - - Early endosome antigen, putative [Ricinus communis]
10 Hb_005731_090 0.1391310036 - - PREDICTED: uncharacterized protein LOC105630164 [Jatropha curcas]
11 Hb_001369_350 0.1392878961 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
12 Hb_011918_040 0.1394443971 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
13 Hb_001417_050 0.1400837974 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]
14 Hb_004875_030 0.1402312576 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
15 Hb_000160_290 0.1405514247 - - unnamed protein product [Vitis vinifera]
16 Hb_002960_160 0.1410737973 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
17 Hb_002070_070 0.141563567 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001811_120 0.1418036594 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
19 Hb_056196_050 0.1418908337 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
20 Hb_000011_210 0.1428067999 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]

Gene co-expression network

sample Hb_007044_230 Hb_007044_230 Hb_102269_010 Hb_102269_010 Hb_007044_230--Hb_102269_010 Hb_000206_120 Hb_000206_120 Hb_007044_230--Hb_000206_120 Hb_010128_120 Hb_010128_120 Hb_007044_230--Hb_010128_120 Hb_058702_010 Hb_058702_010 Hb_007044_230--Hb_058702_010 Hb_000504_150 Hb_000504_150 Hb_007044_230--Hb_000504_150 Hb_000029_320 Hb_000029_320 Hb_007044_230--Hb_000029_320 Hb_003656_180 Hb_003656_180 Hb_102269_010--Hb_003656_180 Hb_001473_090 Hb_001473_090 Hb_102269_010--Hb_001473_090 Hb_001811_120 Hb_001811_120 Hb_102269_010--Hb_001811_120 Hb_000475_020 Hb_000475_020 Hb_102269_010--Hb_000475_020 Hb_003029_130 Hb_003029_130 Hb_102269_010--Hb_003029_130 Hb_000160_290 Hb_000160_290 Hb_102269_010--Hb_000160_290 Hb_000206_120--Hb_102269_010 Hb_010925_020 Hb_010925_020 Hb_000206_120--Hb_010925_020 Hb_000935_090 Hb_000935_090 Hb_000206_120--Hb_000935_090 Hb_132840_100 Hb_132840_100 Hb_000206_120--Hb_132840_100 Hb_004223_290 Hb_004223_290 Hb_000206_120--Hb_004223_290 Hb_000108_080 Hb_000108_080 Hb_010128_120--Hb_000108_080 Hb_010128_120--Hb_001811_120 Hb_004037_030 Hb_004037_030 Hb_010128_120--Hb_004037_030 Hb_010128_120--Hb_000475_020 Hb_007904_180 Hb_007904_180 Hb_010128_120--Hb_007904_180 Hb_031069_020 Hb_031069_020 Hb_010128_120--Hb_031069_020 Hb_000160_220 Hb_000160_220 Hb_058702_010--Hb_000160_220 Hb_058702_010--Hb_102269_010 Hb_005494_020 Hb_005494_020 Hb_058702_010--Hb_005494_020 Hb_002960_160 Hb_002960_160 Hb_058702_010--Hb_002960_160 Hb_002903_080 Hb_002903_080 Hb_058702_010--Hb_002903_080 Hb_002301_260 Hb_002301_260 Hb_058702_010--Hb_002301_260 Hb_000487_220 Hb_000487_220 Hb_000504_150--Hb_000487_220 Hb_004970_160 Hb_004970_160 Hb_000504_150--Hb_004970_160 Hb_000504_150--Hb_003029_130 Hb_001196_060 Hb_001196_060 Hb_000504_150--Hb_001196_060 Hb_000504_150--Hb_001811_120 Hb_000347_570 Hb_000347_570 Hb_000504_150--Hb_000347_570 Hb_002070_070 Hb_002070_070 Hb_000029_320--Hb_002070_070 Hb_015763_030 Hb_015763_030 Hb_000029_320--Hb_015763_030 Hb_000209_070 Hb_000209_070 Hb_000029_320--Hb_000209_070 Hb_022250_110 Hb_022250_110 Hb_000029_320--Hb_022250_110 Hb_000029_320--Hb_001473_090 Hb_000329_490 Hb_000329_490 Hb_000029_320--Hb_000329_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.778699 0.883762 0.188723 0.766844 1.24357 1.68941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.660902 0.222782 0.137184 0.566652 0.838865

CAGE analysis