Hb_007047_010

Information

Type -
Description -
Location Contig7047: 17365-22642
Sequence    

Annotation

kegg
ID rcu:RCOM_1604370
description Alpha-expansin 13 precursor, putative
nr
ID XP_012074731.1
description PREDICTED: expansin-A13 [Jatropha curcas]
swissprot
ID Q9M9P0
description Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2
trembl
ID A0A067KHR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10508 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-a13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55051: 17438-22587 , PASA_asmbl_55052: 17428-22591 , PASA_asmbl_55054: 17925-18075
cDNA
(Sanger)
(ID:Location)		 015_B14.ab1: 17428-19263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007047_010 0.0 - - PREDICTED: expansin-A13 [Jatropha curcas]
2 Hb_002026_190 0.0808299335 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
3 Hb_002660_160 0.0826479899 - - protein binding protein, putative [Ricinus communis]
4 Hb_002749_100 0.0890924907 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
5 Hb_002326_030 0.0911393795 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
6 Hb_007021_020 0.0925340793 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
7 Hb_002352_010 0.0928109129 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
8 Hb_001711_030 0.1009548244 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
9 Hb_012522_030 0.1014843648 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_000362_210 0.1032652838 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
11 Hb_000048_050 0.1087995079 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
12 Hb_084849_020 0.1111337004 - - ARF GTPase activator, putative [Ricinus communis]
13 Hb_010589_040 0.1145575061 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000062_340 0.1148402212 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
15 Hb_008311_010 0.1157505875 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
16 Hb_002527_070 0.116025829 - - axonemal dynein light chain, putative [Ricinus communis]
17 Hb_002387_060 0.1163922825 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001427_120 0.1173656985 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
19 Hb_000046_110 0.1180721691 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
20 Hb_000051_040 0.1191826018 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]

Gene co-expression network

sample Hb_007047_010 Hb_007047_010 Hb_002026_190 Hb_002026_190 Hb_007047_010--Hb_002026_190 Hb_002660_160 Hb_002660_160 Hb_007047_010--Hb_002660_160 Hb_002749_100 Hb_002749_100 Hb_007047_010--Hb_002749_100 Hb_002326_030 Hb_002326_030 Hb_007047_010--Hb_002326_030 Hb_007021_020 Hb_007021_020 Hb_007047_010--Hb_007021_020 Hb_002352_010 Hb_002352_010 Hb_007047_010--Hb_002352_010 Hb_003777_180 Hb_003777_180 Hb_002026_190--Hb_003777_180 Hb_002026_190--Hb_002326_030 Hb_000048_050 Hb_000048_050 Hb_002026_190--Hb_000048_050 Hb_002026_190--Hb_002749_100 Hb_005463_020 Hb_005463_020 Hb_002026_190--Hb_005463_020 Hb_000362_210 Hb_000362_210 Hb_002660_160--Hb_000362_210 Hb_002660_160--Hb_007021_020 Hb_010172_030 Hb_010172_030 Hb_002660_160--Hb_010172_030 Hb_000085_250 Hb_000085_250 Hb_002660_160--Hb_000085_250 Hb_002660_160--Hb_002749_100 Hb_084849_020 Hb_084849_020 Hb_002749_100--Hb_084849_020 Hb_002749_100--Hb_000362_210 Hb_011161_040 Hb_011161_040 Hb_002749_100--Hb_011161_040 Hb_001133_020 Hb_001133_020 Hb_002749_100--Hb_001133_020 Hb_005455_070 Hb_005455_070 Hb_002326_030--Hb_005455_070 Hb_000861_040 Hb_000861_040 Hb_002326_030--Hb_000861_040 Hb_012522_030 Hb_012522_030 Hb_002326_030--Hb_012522_030 Hb_000173_170 Hb_000173_170 Hb_002326_030--Hb_000173_170 Hb_001473_130 Hb_001473_130 Hb_002326_030--Hb_001473_130 Hb_007229_060 Hb_007229_060 Hb_002326_030--Hb_007229_060 Hb_007021_020--Hb_000362_210 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_002352_010--Hb_001473_130 Hb_002527_070 Hb_002527_070 Hb_002352_010--Hb_002527_070 Hb_000427_110 Hb_000427_110 Hb_002352_010--Hb_000427_110 Hb_001677_110 Hb_001677_110 Hb_002352_010--Hb_001677_110 Hb_002352_010--Hb_002326_030 Hb_002352_010--Hb_012522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.14 4.49121 13.7489 26.9827 36.3476 97.9339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
137.634 150.506 147.799 18.7397 16.7075

CAGE analysis