Hb_007054_060

Information

Type -
Description -
Location Contig7054: 62155-65743
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55105: 62158-62270 , PASA_asmbl_55106: 62568-62791 , PASA_asmbl_55108: 64281-65516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007054_060 0.0 - - -
2 Hb_003878_070 0.0564775124 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
3 Hb_000926_190 0.0586570112 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_001258_090 0.0637910563 - - PREDICTED: protein spt2-like [Jatropha curcas]
5 Hb_023386_040 0.0682394739 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
6 Hb_000179_030 0.070046503 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
7 Hb_023386_020 0.0710337891 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
8 Hb_007575_050 0.0711910956 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
9 Hb_036790_100 0.0718528131 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
10 Hb_001227_030 0.0729229191 - - PREDICTED: transcription initiation factor TFIID subunit 2 isoform X1 [Jatropha curcas]
11 Hb_000038_170 0.0738796561 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
12 Hb_000920_060 0.0740540124 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
13 Hb_002603_120 0.0746849317 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
14 Hb_000403_050 0.075786225 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
15 Hb_002175_030 0.0758313842 - - PREDICTED: snRNA-activating protein complex subunit isoform X2 [Jatropha curcas]
16 Hb_001329_160 0.0758638185 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
17 Hb_000092_020 0.0770058974 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
18 Hb_000563_230 0.0773358839 - - phospholipase d zeta, putative [Ricinus communis]
19 Hb_167498_010 0.0775014527 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
20 Hb_000827_070 0.077675985 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007054_060 Hb_007054_060 Hb_003878_070 Hb_003878_070 Hb_007054_060--Hb_003878_070 Hb_000926_190 Hb_000926_190 Hb_007054_060--Hb_000926_190 Hb_001258_090 Hb_001258_090 Hb_007054_060--Hb_001258_090 Hb_023386_040 Hb_023386_040 Hb_007054_060--Hb_023386_040 Hb_000179_030 Hb_000179_030 Hb_007054_060--Hb_000179_030 Hb_023386_020 Hb_023386_020 Hb_007054_060--Hb_023386_020 Hb_007575_050 Hb_007575_050 Hb_003878_070--Hb_007575_050 Hb_000334_280 Hb_000334_280 Hb_003878_070--Hb_000334_280 Hb_110291_010 Hb_110291_010 Hb_003878_070--Hb_110291_010 Hb_003525_010 Hb_003525_010 Hb_003878_070--Hb_003525_010 Hb_003125_120 Hb_003125_120 Hb_003878_070--Hb_003125_120 Hb_000926_190--Hb_023386_020 Hb_000926_190--Hb_023386_040 Hb_000334_270 Hb_000334_270 Hb_000926_190--Hb_000334_270 Hb_000794_050 Hb_000794_050 Hb_000926_190--Hb_000794_050 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_003010_030 Hb_003010_030 Hb_001258_090--Hb_003010_030 Hb_001595_030 Hb_001595_030 Hb_001258_090--Hb_001595_030 Hb_000093_160 Hb_000093_160 Hb_001258_090--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_001258_090--Hb_000038_170 Hb_001258_090--Hb_023386_020 Hb_154745_010 Hb_154745_010 Hb_023386_040--Hb_154745_010 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_006355_010 Hb_006355_010 Hb_000179_030--Hb_006355_010 Hb_008159_020 Hb_008159_020 Hb_000179_030--Hb_008159_020 Hb_000179_030--Hb_005914_060 Hb_001486_340 Hb_001486_340 Hb_000179_030--Hb_001486_340 Hb_000308_030 Hb_000308_030 Hb_000179_030--Hb_000308_030 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_023386_020--Hb_000879_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.5627 3.41058 1.97708 1.47265 2.97729 4.0736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.91814 3.64368 2.10584 2.58404 2.07383

CAGE analysis