Hb_007064_030

Information

Type -
Description -
Location Contig7064: 16212-25590
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID AHC13200.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID V9QEM3
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description movement protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007064_030 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_126044_010 0.1436358023 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_071130_040 0.2411806156 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004656_080 0.2519374691 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_003927_060 0.2656044187 - - hypothetical protein JCGZ_05636 [Jatropha curcas]
6 Hb_057207_010 0.2838911764 - - hypothetical protein F383_17010 [Gossypium arboreum]
7 Hb_001335_050 0.2902068061 - - -
8 Hb_000976_200 0.3091257484 - - -
9 Hb_006212_030 0.324483586 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_005654_010 0.3326942491 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_012938_010 0.3417427359 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_000375_180 0.3442727149 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
13 Hb_107221_010 0.3445468346 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_124621_010 0.3504361319 - - hypothetical protein L484_019698 [Morus notabilis]
15 Hb_003605_010 0.3511282256 - - -
16 Hb_000016_120 0.3524837668 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
17 Hb_001901_030 0.3562929642 - - -
18 Hb_080085_010 0.3726881101 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_004511_060 0.3765254953 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103328625 [Prunus mume]
20 Hb_000340_540 0.3792856727 - - PREDICTED: peroxidase 39-like [Jatropha curcas]

Gene co-expression network

sample Hb_007064_030 Hb_007064_030 Hb_126044_010 Hb_126044_010 Hb_007064_030--Hb_126044_010 Hb_071130_040 Hb_071130_040 Hb_007064_030--Hb_071130_040 Hb_004656_080 Hb_004656_080 Hb_007064_030--Hb_004656_080 Hb_003927_060 Hb_003927_060 Hb_007064_030--Hb_003927_060 Hb_057207_010 Hb_057207_010 Hb_007064_030--Hb_057207_010 Hb_001335_050 Hb_001335_050 Hb_007064_030--Hb_001335_050 Hb_126044_010--Hb_057207_010 Hb_126044_010--Hb_071130_040 Hb_124621_010 Hb_124621_010 Hb_126044_010--Hb_124621_010 Hb_126044_010--Hb_001335_050 Hb_006212_030 Hb_006212_030 Hb_126044_010--Hb_006212_030 Hb_071130_040--Hb_124621_010 Hb_012938_010 Hb_012938_010 Hb_071130_040--Hb_012938_010 Hb_071130_040--Hb_004656_080 Hb_071130_040--Hb_001335_050 Hb_107221_010 Hb_107221_010 Hb_071130_040--Hb_107221_010 Hb_005654_010 Hb_005654_010 Hb_071130_040--Hb_005654_010 Hb_000043_100 Hb_000043_100 Hb_004656_080--Hb_000043_100 Hb_004511_060 Hb_004511_060 Hb_004656_080--Hb_004511_060 Hb_012717_030 Hb_012717_030 Hb_004656_080--Hb_012717_030 Hb_001344_030 Hb_001344_030 Hb_004656_080--Hb_001344_030 Hb_003605_010 Hb_003605_010 Hb_003927_060--Hb_003605_010 Hb_000976_200 Hb_000976_200 Hb_003927_060--Hb_000976_200 Hb_083663_010 Hb_083663_010 Hb_003927_060--Hb_083663_010 Hb_095449_010 Hb_095449_010 Hb_003927_060--Hb_095449_010 Hb_003927_060--Hb_126044_010 Hb_057207_010--Hb_001335_050 Hb_057207_010--Hb_107221_010 Hb_057207_010--Hb_005654_010 Hb_001623_600 Hb_001623_600 Hb_057207_010--Hb_001623_600 Hb_001335_050--Hb_107221_010 Hb_001335_050--Hb_005654_010 Hb_000375_180 Hb_000375_180 Hb_001335_050--Hb_000375_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00933833 0.0385202 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0212151 0.0333861 0 0 0.0706694

CAGE analysis