Hb_007064_040

Information

Type -
Description -
Location Contig7064: 36435-40835
Sequence    

Annotation

kegg
ID rcu:RCOM_0254640
description hypothetical protein
nr
ID XP_002530082.1
description hypothetical protein RCOM_0254640 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVR3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0254640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55129: 36321-36551 , PASA_asmbl_55130: 36565-36940 , PASA_asmbl_55131: 36815-36940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007064_040 0.0 - - hypothetical protein RCOM_0254640 [Ricinus communis]
2 Hb_000836_630 0.0825662186 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
3 Hb_000761_020 0.0876781586 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
4 Hb_001100_050 0.1011467115 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
5 Hb_006816_390 0.1153503096 - - protein phosphatase, putative [Ricinus communis]
6 Hb_000699_140 0.1184183031 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
7 Hb_116349_160 0.1201209883 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
8 Hb_000042_270 0.1230969434 - - myosin vIII, putative [Ricinus communis]
9 Hb_000481_040 0.126271886 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
10 Hb_109842_010 0.1272223323 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
11 Hb_000436_070 0.1273785401 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
12 Hb_007477_080 0.1274894726 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003641_050 0.1312134899 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
14 Hb_000625_020 0.1332411461 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003106_010 0.1334983109 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
16 Hb_000236_250 0.134484184 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000620_010 0.1351791767 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
18 Hb_000120_800 0.13658984 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
19 Hb_002874_070 0.1370254877 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
20 Hb_003609_040 0.139035056 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]

Gene co-expression network

sample Hb_007064_040 Hb_007064_040 Hb_000836_630 Hb_000836_630 Hb_007064_040--Hb_000836_630 Hb_000761_020 Hb_000761_020 Hb_007064_040--Hb_000761_020 Hb_001100_050 Hb_001100_050 Hb_007064_040--Hb_001100_050 Hb_006816_390 Hb_006816_390 Hb_007064_040--Hb_006816_390 Hb_000699_140 Hb_000699_140 Hb_007064_040--Hb_000699_140 Hb_116349_160 Hb_116349_160 Hb_007064_040--Hb_116349_160 Hb_000836_630--Hb_000761_020 Hb_009048_040 Hb_009048_040 Hb_000836_630--Hb_009048_040 Hb_003609_040 Hb_003609_040 Hb_000836_630--Hb_003609_040 Hb_005754_060 Hb_005754_060 Hb_000836_630--Hb_005754_060 Hb_002874_070 Hb_002874_070 Hb_000836_630--Hb_002874_070 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000001_020 Hb_000001_020 Hb_000761_020--Hb_000001_020 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040 Hb_001100_050--Hb_000699_140 Hb_007477_080 Hb_007477_080 Hb_001100_050--Hb_007477_080 Hb_001100_050--Hb_000620_010 Hb_003641_050 Hb_003641_050 Hb_001100_050--Hb_003641_050 Hb_001100_050--Hb_006816_390 Hb_000072_220 Hb_000072_220 Hb_001100_050--Hb_000072_220 Hb_006816_390--Hb_007477_080 Hb_000034_050 Hb_000034_050 Hb_006816_390--Hb_000034_050 Hb_000134_090 Hb_000134_090 Hb_006816_390--Hb_000134_090 Hb_002529_060 Hb_002529_060 Hb_006816_390--Hb_002529_060 Hb_000042_270 Hb_000042_270 Hb_006816_390--Hb_000042_270 Hb_000699_140--Hb_000620_010 Hb_000699_140--Hb_007477_080 Hb_001862_190 Hb_001862_190 Hb_000699_140--Hb_001862_190 Hb_000020_190 Hb_000020_190 Hb_000699_140--Hb_000020_190 Hb_000512_060 Hb_000512_060 Hb_000699_140--Hb_000512_060 Hb_000956_130 Hb_000956_130 Hb_116349_160--Hb_000956_130 Hb_116349_160--Hb_000761_020 Hb_004218_150 Hb_004218_150 Hb_116349_160--Hb_004218_150 Hb_028358_010 Hb_028358_010 Hb_116349_160--Hb_028358_010 Hb_000120_240 Hb_000120_240 Hb_116349_160--Hb_000120_240 Hb_007594_030 Hb_007594_030 Hb_116349_160--Hb_007594_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4401 4.5597 5.98606 7.86287 12.1832 18.4907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4905 5.05358 20.5117 2.51702 4.61854

CAGE analysis