Hb_007065_010

Information

Type -
Description -
Location Contig7065: 37200-40458
Sequence    

Annotation

kegg
ID csv:101228497
description H/ACA ribonucleoprotein complex subunit 3-like protein-like
nr
ID KGN57896.1
description hypothetical protein Csa_3G379730 [Cucumis sativus]
swissprot
ID Q93XX8
description H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana GN=At2g20490 PE=2 SV=2
trembl
ID A0A0A0LCV0
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G379730 PE=4 SV=1
Gene Ontology
ID GO:0072588
description h aca ribonucleoprotein complex subunit 3-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55133: 37265-38905 , PASA_asmbl_55134: 38240-38339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007065_010 0.0 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
2 Hb_002798_020 0.0530982015 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
3 Hb_000789_230 0.0646438261 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
4 Hb_000735_090 0.0668475266 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
5 Hb_000016_080 0.0702148356 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
6 Hb_002613_020 0.0728026619 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
7 Hb_001989_090 0.0762598792 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
8 Hb_017491_060 0.0764081182 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
9 Hb_000676_160 0.0769524586 - - folate carrier protein, putative [Ricinus communis]
10 Hb_001512_080 0.0774217414 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
11 Hb_033153_060 0.0788063217 - - Transcription elongation factor, putative [Ricinus communis]
12 Hb_000265_050 0.0804614089 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
13 Hb_007576_170 0.0810072383 - - conserved hypothetical protein [Ricinus communis]
14 Hb_086639_090 0.0830712646 - - 60S ribosomal protein L7a, putative [Ricinus communis]
15 Hb_004157_030 0.0837368392 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_000836_470 0.0839705284 - - -
17 Hb_087749_010 0.0845445061 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
18 Hb_004459_040 0.0858026416 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
19 Hb_000254_050 0.0858888309 - - hypothetical protein VITISV_010510 [Vitis vinifera]
20 Hb_003226_100 0.0868885422 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]

Gene co-expression network

sample Hb_007065_010 Hb_007065_010 Hb_002798_020 Hb_002798_020 Hb_007065_010--Hb_002798_020 Hb_000789_230 Hb_000789_230 Hb_007065_010--Hb_000789_230 Hb_000735_090 Hb_000735_090 Hb_007065_010--Hb_000735_090 Hb_000016_080 Hb_000016_080 Hb_007065_010--Hb_000016_080 Hb_002613_020 Hb_002613_020 Hb_007065_010--Hb_002613_020 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_000265_050 Hb_000265_050 Hb_002798_020--Hb_000265_050 Hb_003226_100 Hb_003226_100 Hb_002798_020--Hb_003226_100 Hb_004127_020 Hb_004127_020 Hb_002798_020--Hb_004127_020 Hb_002056_050 Hb_002056_050 Hb_002798_020--Hb_002056_050 Hb_000789_230--Hb_000016_080 Hb_002110_200 Hb_002110_200 Hb_000789_230--Hb_002110_200 Hb_000254_050 Hb_000254_050 Hb_000789_230--Hb_000254_050 Hb_017413_010 Hb_017413_010 Hb_000789_230--Hb_017413_010 Hb_005463_140 Hb_005463_140 Hb_000789_230--Hb_005463_140 Hb_007747_050 Hb_007747_050 Hb_000735_090--Hb_007747_050 Hb_000735_090--Hb_001989_090 Hb_003494_050 Hb_003494_050 Hb_000735_090--Hb_003494_050 Hb_000735_090--Hb_000016_080 Hb_000085_350 Hb_000085_350 Hb_000735_090--Hb_000085_350 Hb_000016_080--Hb_000254_050 Hb_001728_060 Hb_001728_060 Hb_000016_080--Hb_001728_060 Hb_000016_080--Hb_002613_020 Hb_000431_070 Hb_000431_070 Hb_002613_020--Hb_000431_070 Hb_087749_010 Hb_087749_010 Hb_002613_020--Hb_087749_010 Hb_002613_020--Hb_007576_170 Hb_033153_060 Hb_033153_060 Hb_002613_020--Hb_033153_060 Hb_000836_470 Hb_000836_470 Hb_001989_090--Hb_000836_470 Hb_001728_030 Hb_001728_030 Hb_001989_090--Hb_001728_030 Hb_005305_150 Hb_005305_150 Hb_001989_090--Hb_005305_150 Hb_001989_090--Hb_002798_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7065 5.12673 14.8126 19.7563 16.1891 17.8365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.2237 63.144 22.3951 20.4449 18.632

CAGE analysis