Hb_007075_040

Information

Type -
Description -
Location Contig7075: 71732-79988
Sequence    

Annotation

kegg
ID cic:CICLE_v10004589mg
description hypothetical protein
nr
ID KDO50129.1
description hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
swissprot
ID Q9LZA4
description Probable methyltransferase PMT7 OS=Arabidopsis thaliana GN=At5g04060 PE=2 SV=1
trembl
ID A0A067E4J5
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039518mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007075_040 0.0 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
2 Hb_005539_220 0.0393533842 - - spermidine synthase 1, putative [Ricinus communis]
3 Hb_000230_560 0.0571470675 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
4 Hb_003665_060 0.0639869079 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
5 Hb_156973_010 0.0647303811 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000020_190 0.0675778034 - - hypothetical protein RCOM_0452240 [Ricinus communis]
7 Hb_000883_020 0.0692318461 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
8 Hb_000403_050 0.0711777957 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
9 Hb_016172_020 0.0713114045 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
10 Hb_010139_040 0.0713116889 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_008643_210 0.0726273091 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
12 Hb_036790_100 0.0731530201 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
13 Hb_000879_200 0.0733418882 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
14 Hb_011995_010 0.0742743972 - - dc50, putative [Ricinus communis]
15 Hb_004841_010 0.0749743205 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
16 Hb_003728_080 0.0750764983 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
17 Hb_001258_090 0.0766295766 - - PREDICTED: protein spt2-like [Jatropha curcas]
18 Hb_001926_030 0.0766757974 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
19 Hb_000010_330 0.0767076433 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
20 Hb_000029_050 0.0769768821 - - expressed protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007075_040 Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_007075_040--Hb_005539_220 Hb_000230_560 Hb_000230_560 Hb_007075_040--Hb_000230_560 Hb_003665_060 Hb_003665_060 Hb_007075_040--Hb_003665_060 Hb_156973_010 Hb_156973_010 Hb_007075_040--Hb_156973_010 Hb_000020_190 Hb_000020_190 Hb_007075_040--Hb_000020_190 Hb_000883_020 Hb_000883_020 Hb_007075_040--Hb_000883_020 Hb_005539_220--Hb_000020_190 Hb_000789_060 Hb_000789_060 Hb_005539_220--Hb_000789_060 Hb_000230_200 Hb_000230_200 Hb_005539_220--Hb_000230_200 Hb_005539_220--Hb_000230_560 Hb_008246_040 Hb_008246_040 Hb_005539_220--Hb_008246_040 Hb_002997_080 Hb_002997_080 Hb_000230_560--Hb_002997_080 Hb_000230_560--Hb_003665_060 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_000230_560--Hb_000883_020 Hb_000010_330 Hb_000010_330 Hb_003665_060--Hb_000010_330 Hb_003964_070 Hb_003964_070 Hb_003665_060--Hb_003964_070 Hb_007317_110 Hb_007317_110 Hb_003665_060--Hb_007317_110 Hb_003665_060--Hb_003030_070 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160 Hb_023386_020 Hb_023386_020 Hb_156973_010--Hb_023386_020 Hb_002175_030 Hb_002175_030 Hb_156973_010--Hb_002175_030 Hb_003125_160 Hb_003125_160 Hb_156973_010--Hb_003125_160 Hb_001258_090 Hb_001258_090 Hb_156973_010--Hb_001258_090 Hb_000853_230 Hb_000853_230 Hb_156973_010--Hb_000853_230 Hb_000403_050 Hb_000403_050 Hb_156973_010--Hb_000403_050 Hb_006922_100 Hb_006922_100 Hb_000020_190--Hb_006922_100 Hb_001124_160 Hb_001124_160 Hb_000020_190--Hb_001124_160 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41621 1.10809 1.37931 1.21578 1.44506 2.27727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54079 1.72664 1.67056 1.05995 1.2023

CAGE analysis