Hb_007083_020

Information

Type -
Description -
Location Contig7083: 25237-25877
Sequence    

Annotation

kegg
ID mdm:103430270
description ubiquitin carboxyl-terminal hydrolase 13-like
nr
ID EMT23107.1
description hypothetical protein F775_15403 [Aegilops tauschii]
swissprot
ID -
description -
trembl
ID W5G2U1
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0003924
description ubiquitin carboxyl-terminal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007083_020 0.0 - - hypothetical protein F775_15403 [Aegilops tauschii]
2 Hb_183522_010 0.1249472777 - - Far upstream element-binding protein, putative [Ricinus communis]
3 Hb_068014_010 0.1254229843 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
4 Hb_106415_010 0.1288382392 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
5 Hb_003371_170 0.1462084419 - - conserved hypothetical protein [Ricinus communis]
6 Hb_019053_010 0.1557941862 - - -
7 Hb_005542_090 0.1560417992 - - PREDICTED: putative disease resistance protein RGA4, partial [Elaeis guineensis]
8 Hb_169170_010 0.1634144481 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
9 Hb_003030_040 0.1678214015 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
10 Hb_033385_010 0.1684185152 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
11 Hb_000082_020 0.1696047053 - - -
12 Hb_006663_090 0.1759735346 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
13 Hb_001252_200 0.1759907193 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
14 Hb_002815_050 0.1782033026 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
15 Hb_000007_460 0.179093638 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
16 Hb_003656_150 0.17915531 - - -
17 Hb_000015_070 0.1805961614 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
18 Hb_009119_020 0.1855621908 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
19 Hb_128998_010 0.1875833046 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
20 Hb_177103_010 0.1887180496 - - PREDICTED: histone H2AX [Elaeis guineensis]

Gene co-expression network

sample Hb_007083_020 Hb_007083_020 Hb_183522_010 Hb_183522_010 Hb_007083_020--Hb_183522_010 Hb_068014_010 Hb_068014_010 Hb_007083_020--Hb_068014_010 Hb_106415_010 Hb_106415_010 Hb_007083_020--Hb_106415_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_019053_010 Hb_019053_010 Hb_007083_020--Hb_019053_010 Hb_005542_090 Hb_005542_090 Hb_007083_020--Hb_005542_090 Hb_183522_010--Hb_106415_010 Hb_114079_010 Hb_114079_010 Hb_183522_010--Hb_114079_010 Hb_010964_020 Hb_010964_020 Hb_183522_010--Hb_010964_020 Hb_000053_030 Hb_000053_030 Hb_183522_010--Hb_000053_030 Hb_005107_020 Hb_005107_020 Hb_183522_010--Hb_005107_020 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_005679_070 Hb_005679_070 Hb_068014_010--Hb_005679_070 Hb_006663_090 Hb_006663_090 Hb_068014_010--Hb_006663_090 Hb_068014_010--Hb_019053_010 Hb_068014_010--Hb_106415_010 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_000015_070 Hb_000015_070 Hb_003371_170--Hb_000015_070 Hb_003371_170--Hb_006663_090 Hb_003371_170--Hb_106415_010 Hb_108227_010 Hb_108227_010 Hb_003371_170--Hb_108227_010 Hb_076875_020 Hb_076875_020 Hb_003371_170--Hb_076875_020 Hb_003371_170--Hb_068014_010 Hb_009119_020 Hb_009119_020 Hb_019053_010--Hb_009119_020 Hb_000074_060 Hb_000074_060 Hb_019053_010--Hb_000074_060 Hb_115477_010 Hb_115477_010 Hb_019053_010--Hb_115477_010 Hb_003633_040 Hb_003633_040 Hb_019053_010--Hb_003633_040 Hb_179812_010 Hb_179812_010 Hb_005542_090--Hb_179812_010 Hb_010504_030 Hb_010504_030 Hb_005542_090--Hb_010504_030 Hb_000261_360 Hb_000261_360 Hb_005542_090--Hb_000261_360 Hb_003581_010 Hb_003581_010 Hb_005542_090--Hb_003581_010 Hb_000007_460 Hb_000007_460 Hb_005542_090--Hb_000007_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25217 2.7137 2.06459 17.5956 4.10297 28.502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.91085 3.43393 1.12934 4.2506 0.928156

CAGE analysis