Hb_007083_030

Information

Type -
Description -
Location Contig7083: 50029-84081
Sequence    

Annotation

kegg
ID rcu:RCOM_0941540
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_002514434.1
description Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID B9RL15
description Ubiquitin carboxyl-terminal hydrolase OS=Ricinus communis GN=RCOM_0941540 PE=3 SV=1
Gene Ontology
ID GO:0008234
description 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007083_030 0.0 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
2 Hb_011618_090 0.0677120773 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
3 Hb_001377_160 0.0708337355 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
4 Hb_000579_230 0.0718293453 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
5 Hb_003943_010 0.0724339475 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002815_030 0.0781679442 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
7 Hb_001946_340 0.0797300033 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
8 Hb_000590_050 0.08087654 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
9 Hb_003498_120 0.0818718201 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
10 Hb_003120_080 0.0822868475 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
11 Hb_007508_080 0.0834790143 - - PREDICTED: presenilin-like protein At2g29900 [Jatropha curcas]
12 Hb_000025_280 0.0842543891 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
13 Hb_009193_120 0.0844992785 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
14 Hb_006373_010 0.0849524224 - - Potassium transporter 11 [Gossypium arboreum]
15 Hb_008103_020 0.0856428362 - - hypothetical protein POPTR_0003s20310g [Populus trichocarpa]
16 Hb_001511_240 0.0856950201 - - PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
17 Hb_001266_100 0.0859154837 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
18 Hb_001821_090 0.0863183873 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
19 Hb_012395_140 0.0867525447 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
20 Hb_011537_050 0.0869483465 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007083_030 Hb_007083_030 Hb_011618_090 Hb_011618_090 Hb_007083_030--Hb_011618_090 Hb_001377_160 Hb_001377_160 Hb_007083_030--Hb_001377_160 Hb_000579_230 Hb_000579_230 Hb_007083_030--Hb_000579_230 Hb_003943_010 Hb_003943_010 Hb_007083_030--Hb_003943_010 Hb_002815_030 Hb_002815_030 Hb_007083_030--Hb_002815_030 Hb_001946_340 Hb_001946_340 Hb_007083_030--Hb_001946_340 Hb_003835_070 Hb_003835_070 Hb_011618_090--Hb_003835_070 Hb_000317_370 Hb_000317_370 Hb_011618_090--Hb_000317_370 Hb_011618_090--Hb_000579_230 Hb_000922_360 Hb_000922_360 Hb_011618_090--Hb_000922_360 Hb_003544_060 Hb_003544_060 Hb_011618_090--Hb_003544_060 Hb_001377_160--Hb_003943_010 Hb_004668_060 Hb_004668_060 Hb_001377_160--Hb_004668_060 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_000398_080 Hb_000398_080 Hb_001377_160--Hb_000398_080 Hb_003498_120 Hb_003498_120 Hb_001377_160--Hb_003498_120 Hb_000139_130 Hb_000139_130 Hb_001377_160--Hb_000139_130 Hb_012395_140 Hb_012395_140 Hb_000579_230--Hb_012395_140 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010 Hb_003943_010--Hb_001946_340 Hb_000227_220 Hb_000227_220 Hb_003943_010--Hb_000227_220 Hb_003943_010--Hb_000398_080 Hb_000879_040 Hb_000879_040 Hb_003943_010--Hb_000879_040 Hb_159558_010 Hb_159558_010 Hb_003943_010--Hb_159558_010 Hb_001343_040 Hb_001343_040 Hb_002815_030--Hb_001343_040 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_002815_030--Hb_012395_140 Hb_002815_030--Hb_000395_070 Hb_000592_030 Hb_000592_030 Hb_002815_030--Hb_000592_030 Hb_007123_030 Hb_007123_030 Hb_001946_340--Hb_007123_030 Hb_007747_040 Hb_007747_040 Hb_001946_340--Hb_007747_040 Hb_004935_030 Hb_004935_030 Hb_001946_340--Hb_004935_030 Hb_001767_140 Hb_001767_140 Hb_001946_340--Hb_001767_140 Hb_001946_340--Hb_001377_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.53217 4.0265 1.76431 2.62953 2.25856 3.03718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64812 1.52462 1.80096 3.73899 2.7242

CAGE analysis