Hb_007083_040

Information

Type -
Description -
Location Contig7083: 86667-91770
Sequence    

Annotation

kegg
ID bvg:104901272
description uncharacterized LOC104901272
nr
ID XP_010687126.1
description PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F1C3E6
description Putative uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007083_040 0.0 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
2 Hb_028527_010 0.1576209404 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
3 Hb_001244_030 0.1894436468 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_002249_200 0.2029953229 transcription factor TF Family: LFY LEAFY-like protein [Pistacia chinensis]
5 Hb_033095_050 0.2041714391 - - hypothetical protein VITISV_038692 [Vitis vinifera]
6 Hb_025528_010 0.2060187049 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
7 Hb_005542_170 0.2243132815 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_165100_010 0.2268098243 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
9 Hb_002800_020 0.2285019533 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_012753_070 0.2410517738 - - hypothetical protein VITISV_033646 [Vitis vinifera]
11 Hb_000025_460 0.2432971082 - - PREDICTED: uncharacterized protein LOC104895905 [Beta vulgaris subsp. vulgaris]
12 Hb_120076_010 0.243309955 - - PREDICTED: uncharacterized protein LOC104783951 [Camelina sativa]
13 Hb_003868_010 0.2433160751 - - -
14 Hb_010367_010 0.2434059674 - - -
15 Hb_000465_010 0.2435294382 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial-like [Citrus sinensis]
16 Hb_154188_010 0.2444814097 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
17 Hb_012781_030 0.2447483194 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_073995_010 0.2448485333 - - receptor-like kinase [Medicago truncatula]
19 Hb_000466_180 0.2450698024 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_007167_100 0.2450867117 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_007083_040 Hb_007083_040 Hb_028527_010 Hb_028527_010 Hb_007083_040--Hb_028527_010 Hb_001244_030 Hb_001244_030 Hb_007083_040--Hb_001244_030 Hb_002249_200 Hb_002249_200 Hb_007083_040--Hb_002249_200 Hb_033095_050 Hb_033095_050 Hb_007083_040--Hb_033095_050 Hb_025528_010 Hb_025528_010 Hb_007083_040--Hb_025528_010 Hb_005542_170 Hb_005542_170 Hb_007083_040--Hb_005542_170 Hb_028527_010--Hb_001244_030 Hb_028527_010--Hb_002249_200 Hb_028527_010--Hb_025528_010 Hb_028527_010--Hb_005542_170 Hb_028527_010--Hb_033095_050 Hb_001244_030--Hb_002249_200 Hb_001244_030--Hb_025528_010 Hb_001244_030--Hb_005542_170 Hb_001244_030--Hb_033095_050 Hb_000474_020 Hb_000474_020 Hb_001244_030--Hb_000474_020 Hb_002249_200--Hb_025528_010 Hb_002249_200--Hb_005542_170 Hb_002249_200--Hb_033095_050 Hb_005031_010 Hb_005031_010 Hb_002249_200--Hb_005031_010 Hb_033095_050--Hb_005542_170 Hb_002800_020 Hb_002800_020 Hb_033095_050--Hb_002800_020 Hb_033095_050--Hb_025528_010 Hb_033095_050--Hb_005031_010 Hb_101624_010 Hb_101624_010 Hb_033095_050--Hb_101624_010 Hb_025528_010--Hb_005542_170 Hb_025528_010--Hb_005031_010 Hb_005542_170--Hb_005031_010 Hb_005542_170--Hb_101624_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.00870034 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0155276 0 0.0246836 0.164626

CAGE analysis