Hb_007083_050

Information

Type -
Description -
Location Contig7083: 97755-98616
Sequence    

Annotation

kegg
ID mdm:103449611
description ubiquitin carboxyl-terminal hydrolase 12-like
nr
ID XP_010243663.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
swissprot
ID Q9M2J1
description MATH domain and coiled-coil domain-containing protein At3g58250 OS=Arabidopsis thaliana GN=At3g58250 PE=3 SV=2
trembl
ID A5BAR3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012267 PE=4 SV=1
Gene Ontology
ID GO:0008234
description 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007083_050 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
2 Hb_005318_020 0.1312768627 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
3 Hb_079978_010 0.1313016216 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
4 Hb_169170_010 0.1654544127 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
5 Hb_177103_010 0.1681356099 - - PREDICTED: histone H2AX [Elaeis guineensis]
6 Hb_000084_130 0.1748326003 - - -
7 Hb_122567_020 0.180881398 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
8 Hb_007447_020 0.1854451567 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
9 Hb_007188_030 0.1992638101 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
10 Hb_006198_090 0.2020082494 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
11 Hb_021943_070 0.2037698315 - - -
12 Hb_000617_170 0.2053208178 - - -
13 Hb_000805_300 0.2064713936 - - -
14 Hb_008096_020 0.2104722699 - - -
15 Hb_005933_010 0.2119902795 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
16 Hb_003029_100 0.2120032707 - - -
17 Hb_000248_030 0.2127186296 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
18 Hb_031866_050 0.2132051201 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
19 Hb_001907_090 0.213596811 - - -
20 Hb_003656_150 0.2138746229 - - -

Gene co-expression network

sample Hb_007083_050 Hb_007083_050 Hb_005318_020 Hb_005318_020 Hb_007083_050--Hb_005318_020 Hb_079978_010 Hb_079978_010 Hb_007083_050--Hb_079978_010 Hb_169170_010 Hb_169170_010 Hb_007083_050--Hb_169170_010 Hb_177103_010 Hb_177103_010 Hb_007083_050--Hb_177103_010 Hb_000084_130 Hb_000084_130 Hb_007083_050--Hb_000084_130 Hb_122567_020 Hb_122567_020 Hb_007083_050--Hb_122567_020 Hb_005318_020--Hb_079978_010 Hb_007447_020 Hb_007447_020 Hb_005318_020--Hb_007447_020 Hb_000683_090 Hb_000683_090 Hb_005318_020--Hb_000683_090 Hb_005318_020--Hb_169170_010 Hb_005318_020--Hb_000084_130 Hb_079978_010--Hb_122567_020 Hb_101151_030 Hb_101151_030 Hb_079978_010--Hb_101151_030 Hb_000805_300 Hb_000805_300 Hb_079978_010--Hb_000805_300 Hb_079978_010--Hb_007447_020 Hb_169170_010--Hb_177103_010 Hb_068014_010 Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_006198_090 Hb_006198_090 Hb_169170_010--Hb_006198_090 Hb_169170_010--Hb_007447_020 Hb_007188_030 Hb_007188_030 Hb_169170_010--Hb_007188_030 Hb_177103_010--Hb_007188_030 Hb_177103_010--Hb_006198_090 Hb_003656_150 Hb_003656_150 Hb_177103_010--Hb_003656_150 Hb_005679_070 Hb_005679_070 Hb_177103_010--Hb_005679_070 Hb_177103_010--Hb_068014_010 Hb_008096_020 Hb_008096_020 Hb_000084_130--Hb_008096_020 Hb_000084_130--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_000084_130--Hb_006995_010 Hb_000084_130--Hb_177103_010 Hb_005933_010 Hb_005933_010 Hb_122567_020--Hb_005933_010 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_059952_010 Hb_059952_010 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.14092 0.364139 8.06798 0.97808 34.3256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.35901 2.1392 1.16371 2.58734 1.68828

CAGE analysis