Hb_007086_010

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig7086: 9522-13502
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08080g
description hypothetical protein
nr
ID XP_012071368.1
description PREDICTED: GATA transcription factor 26-like [Jatropha curcas]
swissprot
ID Q5PP38
description GATA transcription factor 27 OS=Arabidopsis thaliana GN=GATA27 PE=2 SV=1
trembl
ID A0A067KRY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05054 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007086_010 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26-like [Jatropha curcas]
2 Hb_030385_010 0.0847513263 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
3 Hb_156825_010 0.0960454263 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
4 Hb_001380_020 0.1003813063 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
5 Hb_001009_040 0.1185451768 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
6 Hb_005389_150 0.1228349318 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000270_630 0.1230881722 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
8 Hb_003688_130 0.1231651346 - - phosphoserine phosphatase, putative [Ricinus communis]
9 Hb_094022_010 0.1241496466 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
10 Hb_001158_220 0.1268974754 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
11 Hb_007594_130 0.1272507706 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
12 Hb_005016_170 0.1273377 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000106_130 0.1275934964 - - unnamed protein product [Vitis vinifera]
14 Hb_000268_020 0.1288453434 - - conserved hypothetical protein [Ricinus communis]
15 Hb_040262_010 0.1292128812 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
16 Hb_000086_380 0.1304624328 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
17 Hb_001454_400 0.1320167325 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
18 Hb_002671_100 0.1323993579 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
19 Hb_002349_040 0.1327583496 - - PREDICTED: RNA pseudouridine synthase 5 [Jatropha curcas]
20 Hb_002027_070 0.1328693726 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_007086_010 Hb_007086_010 Hb_030385_010 Hb_030385_010 Hb_007086_010--Hb_030385_010 Hb_156825_010 Hb_156825_010 Hb_007086_010--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_007086_010--Hb_001380_020 Hb_001009_040 Hb_001009_040 Hb_007086_010--Hb_001009_040 Hb_005389_150 Hb_005389_150 Hb_007086_010--Hb_005389_150 Hb_000270_630 Hb_000270_630 Hb_007086_010--Hb_000270_630 Hb_001541_230 Hb_001541_230 Hb_030385_010--Hb_001541_230 Hb_004577_020 Hb_004577_020 Hb_030385_010--Hb_004577_020 Hb_010417_080 Hb_010417_080 Hb_030385_010--Hb_010417_080 Hb_000207_120 Hb_000207_120 Hb_030385_010--Hb_000207_120 Hb_106724_020 Hb_106724_020 Hb_030385_010--Hb_106724_020 Hb_156825_010--Hb_001380_020 Hb_011671_090 Hb_011671_090 Hb_156825_010--Hb_011671_090 Hb_003688_130 Hb_003688_130 Hb_156825_010--Hb_003688_130 Hb_030131_040 Hb_030131_040 Hb_156825_010--Hb_030131_040 Hb_001123_030 Hb_001123_030 Hb_156825_010--Hb_001123_030 Hb_001158_220 Hb_001158_220 Hb_001380_020--Hb_001158_220 Hb_070739_010 Hb_070739_010 Hb_001380_020--Hb_070739_010 Hb_002495_040 Hb_002495_040 Hb_001380_020--Hb_002495_040 Hb_007594_130 Hb_007594_130 Hb_001380_020--Hb_007594_130 Hb_000169_010 Hb_000169_010 Hb_001009_040--Hb_000169_010 Hb_001009_040--Hb_005389_150 Hb_000808_040 Hb_000808_040 Hb_001009_040--Hb_000808_040 Hb_061908_010 Hb_061908_010 Hb_001009_040--Hb_061908_010 Hb_001009_040--Hb_001158_220 Hb_008406_160 Hb_008406_160 Hb_001009_040--Hb_008406_160 Hb_003266_050 Hb_003266_050 Hb_005389_150--Hb_003266_050 Hb_005389_150--Hb_000169_010 Hb_003011_040 Hb_003011_040 Hb_005389_150--Hb_003011_040 Hb_001269_320 Hb_001269_320 Hb_005389_150--Hb_001269_320 Hb_010691_060 Hb_010691_060 Hb_005389_150--Hb_010691_060 Hb_000523_050 Hb_000523_050 Hb_000270_630--Hb_000523_050 Hb_002946_160 Hb_002946_160 Hb_000270_630--Hb_002946_160 Hb_000009_480 Hb_000009_480 Hb_000270_630--Hb_000009_480 Hb_103012_010 Hb_103012_010 Hb_000270_630--Hb_103012_010 Hb_003813_130 Hb_003813_130 Hb_000270_630--Hb_003813_130 Hb_040262_010 Hb_040262_010 Hb_000270_630--Hb_040262_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.57675 4.39865 5.4902 6.96486 11.3298 11.4665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6129 7.10011 1.88222 7.66937 2.28867

CAGE analysis