Hb_007100_030

Information

Type -
Description -
Location Contig7100: 53518-54295
Sequence    

Annotation

kegg
ID cmo:103496520
description 40S ribosomal protein S17-3
nr
ID ADR71228.1
description 40S ribosomal protein S17B [Hevea brasiliensis]
swissprot
ID Q9SQZ1
description 40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3
trembl
ID I3NMJ1
description 40S ribosomal protein S17B OS=Hevea brasiliensis GN=RPS17B PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55232: 53188-55161 , PASA_asmbl_55233: 53188-55160 , PASA_asmbl_55234: 54834-55141
cDNA
(Sanger)
(ID:Location)		 002_C10.ab1: 53339-55160 , 005_O13.ab1: 53338-55160 , 014_P02.ab1: 53450-55155 , 018_C13.ab1: 53339-55160 , 018_D14.ab1: 53402-55160 , 021_M12.ab1: 53378-55160 , 028_L21.ab1: 53564-55161 , 028_O14.ab1: 53661-55154 , 034_M12.ab1: 53338-55160 , 043_G04.ab1: 53339-55155 , 043_H24.ab1: 53381-55160 , 051_J20.ab1: 53365-55160

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007100_030 0.0 - - 40S ribosomal protein S17B [Hevea brasiliensis]
2 Hb_001842_040 0.0782789646 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
3 Hb_000441_190 0.0811252988 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
4 Hb_000963_180 0.0870336598 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
5 Hb_001141_030 0.0887306317 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
6 Hb_138585_060 0.0887840948 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
7 Hb_003203_040 0.0901261409 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
8 Hb_000023_340 0.090404503 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
9 Hb_015175_030 0.0919015707 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
10 Hb_011628_040 0.092841218 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
11 Hb_001461_010 0.0941333748 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
12 Hb_029866_070 0.0951362219 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
13 Hb_003671_020 0.0958199696 - - calcineurin B, putative [Ricinus communis]
14 Hb_001829_060 0.0974163428 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
15 Hb_005731_170 0.0994891919 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
16 Hb_001322_150 0.1002828422 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
17 Hb_003893_050 0.1006609477 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
18 Hb_001505_020 0.1030805362 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
19 Hb_003455_040 0.1034409921 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
20 Hb_010174_020 0.1035403665 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007100_030 Hb_007100_030 Hb_001842_040 Hb_001842_040 Hb_007100_030--Hb_001842_040 Hb_000441_190 Hb_000441_190 Hb_007100_030--Hb_000441_190 Hb_000963_180 Hb_000963_180 Hb_007100_030--Hb_000963_180 Hb_001141_030 Hb_001141_030 Hb_007100_030--Hb_001141_030 Hb_138585_060 Hb_138585_060 Hb_007100_030--Hb_138585_060 Hb_003203_040 Hb_003203_040 Hb_007100_030--Hb_003203_040 Hb_001842_040--Hb_000441_190 Hb_001461_010 Hb_001461_010 Hb_001842_040--Hb_001461_010 Hb_005278_020 Hb_005278_020 Hb_001842_040--Hb_005278_020 Hb_000283_110 Hb_000283_110 Hb_001842_040--Hb_000283_110 Hb_003893_050 Hb_003893_050 Hb_001842_040--Hb_003893_050 Hb_000441_190--Hb_003893_050 Hb_000441_190--Hb_000283_110 Hb_000441_190--Hb_001461_010 Hb_003994_040 Hb_003994_040 Hb_000441_190--Hb_003994_040 Hb_000023_340 Hb_000023_340 Hb_000441_190--Hb_000023_340 Hb_000963_180--Hb_000023_340 Hb_029866_070 Hb_029866_070 Hb_000963_180--Hb_029866_070 Hb_000046_110 Hb_000046_110 Hb_000963_180--Hb_000046_110 Hb_000963_180--Hb_001461_010 Hb_001829_060 Hb_001829_060 Hb_000963_180--Hb_001829_060 Hb_029866_040 Hb_029866_040 Hb_000963_180--Hb_029866_040 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_001143_080 Hb_001143_080 Hb_001141_030--Hb_001143_080 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_012753_160 Hb_012753_160 Hb_001141_030--Hb_012753_160 Hb_001141_030--Hb_003994_040 Hb_021409_030 Hb_021409_030 Hb_138585_060--Hb_021409_030 Hb_000072_080 Hb_000072_080 Hb_138585_060--Hb_000072_080 Hb_000258_170 Hb_000258_170 Hb_138585_060--Hb_000258_170 Hb_138585_060--Hb_001141_030 Hb_000479_010 Hb_000479_010 Hb_138585_060--Hb_000479_010 Hb_011628_040 Hb_011628_040 Hb_003203_040--Hb_011628_040 Hb_003203_040--Hb_003893_050 Hb_010672_070 Hb_010672_070 Hb_003203_040--Hb_010672_070 Hb_005511_160 Hb_005511_160 Hb_003203_040--Hb_005511_160 Hb_005063_050 Hb_005063_050 Hb_003203_040--Hb_005063_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
283.714 165.917 226.933 442.547 314.155 655.891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
585.157 1274.44 946.558 214.391 180.392

CAGE analysis