Hb_007101_100

Information

Type -
Description -
Location Contig7101: 50051-53307
Sequence    

Annotation

kegg
ID pop:POPTR_0010s10560g
description POPTRDRAFT_822017; hypothetical protein
nr
ID XP_012092050.1
description PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
swissprot
ID Q6NSN1
description Protein LSM12 homolog B OS=Danio rerio GN=lsm12b PE=2 SV=1
trembl
ID A0A067JMS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21781 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55241: 50043-53218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_100 0.0 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
2 Hb_005063_040 0.0715412884 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
3 Hb_004374_200 0.0721611757 - - putative GMP synthase [Oxybasis rubra]
4 Hb_001454_140 0.0723241944 - - protein arginine n-methyltransferase, putative [Ricinus communis]
5 Hb_002232_170 0.0750619881 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
6 Hb_002374_160 0.0848837113 - - PREDICTED: N-glycosylase/DNA lyase OGG1 isoform X1 [Jatropha curcas]
7 Hb_000963_190 0.0856031539 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
8 Hb_000997_060 0.0891313679 - - PREDICTED: DNA repair protein XRCC4 [Jatropha curcas]
9 Hb_027892_060 0.0924391014 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
10 Hb_001369_060 0.0929892397 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
11 Hb_001124_210 0.0942277232 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000175_070 0.0947401625 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
13 Hb_006447_010 0.0953532812 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
14 Hb_002107_160 0.0956377726 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_000808_040 0.096595885 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
16 Hb_000169_010 0.0981513325 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
17 Hb_015941_030 0.0991824736 - - unknown [Populus trichocarpa]
18 Hb_003602_040 0.0997291627 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_001235_070 0.100531543 - - conserved hypothetical protein [Ricinus communis]
20 Hb_033491_010 0.1009333679 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]

Gene co-expression network

sample Hb_007101_100 Hb_007101_100 Hb_005063_040 Hb_005063_040 Hb_007101_100--Hb_005063_040 Hb_004374_200 Hb_004374_200 Hb_007101_100--Hb_004374_200 Hb_001454_140 Hb_001454_140 Hb_007101_100--Hb_001454_140 Hb_002232_170 Hb_002232_170 Hb_007101_100--Hb_002232_170 Hb_002374_160 Hb_002374_160 Hb_007101_100--Hb_002374_160 Hb_000963_190 Hb_000963_190 Hb_007101_100--Hb_000963_190 Hb_076787_010 Hb_076787_010 Hb_005063_040--Hb_076787_010 Hb_002616_050 Hb_002616_050 Hb_005063_040--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_005063_040--Hb_028872_140 Hb_003005_020 Hb_003005_020 Hb_005063_040--Hb_003005_020 Hb_001030_120 Hb_001030_120 Hb_005063_040--Hb_001030_120 Hb_004374_200--Hb_001454_140 Hb_005686_110 Hb_005686_110 Hb_004374_200--Hb_005686_110 Hb_004374_200--Hb_002374_160 Hb_000620_080 Hb_000620_080 Hb_004374_200--Hb_000620_080 Hb_001124_210 Hb_001124_210 Hb_004374_200--Hb_001124_210 Hb_001246_100 Hb_001246_100 Hb_001454_140--Hb_001246_100 Hb_002686_270 Hb_002686_270 Hb_001454_140--Hb_002686_270 Hb_033642_010 Hb_033642_010 Hb_001454_140--Hb_033642_010 Hb_001454_140--Hb_002374_160 Hb_015941_030 Hb_015941_030 Hb_002232_170--Hb_015941_030 Hb_000997_060 Hb_000997_060 Hb_002232_170--Hb_000997_060 Hb_000169_010 Hb_000169_010 Hb_002232_170--Hb_000169_010 Hb_002232_170--Hb_002374_160 Hb_000808_040 Hb_000808_040 Hb_002232_170--Hb_000808_040 Hb_004128_190 Hb_004128_190 Hb_002374_160--Hb_004128_190 Hb_000245_130 Hb_000245_130 Hb_002374_160--Hb_000245_130 Hb_000398_180 Hb_000398_180 Hb_002374_160--Hb_000398_180 Hb_000720_120 Hb_000720_120 Hb_002374_160--Hb_000720_120 Hb_000676_290 Hb_000676_290 Hb_000963_190--Hb_000676_290 Hb_001235_070 Hb_001235_070 Hb_000963_190--Hb_001235_070 Hb_007193_100 Hb_007193_100 Hb_000963_190--Hb_007193_100 Hb_000963_190--Hb_001454_140 Hb_071130_030 Hb_071130_030 Hb_000963_190--Hb_071130_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.9721 35.3939 18.4634 27.047 80.4291 150.577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.772 83.3491 59.2827 31.1924 29.5682

CAGE analysis