Hb_007101_110

Information

Type -
Description -
Location Contig7101: 56568-61614
Sequence    

Annotation

kegg
ID cic:CICLE_v10031192mg
description hypothetical protein
nr
ID XP_012092049.1
description PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
swissprot
ID Q0WPE9
description Nucleobase-ascorbate transporter 7 OS=Arabidopsis thaliana GN=NAT7 PE=2 SV=2
trembl
ID A0A067JP55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21780 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55242: 56587-61781
cDNA
(Sanger)
(ID:Location)		 001_L10.ab1: 56589-58010 , 030_M19.ab1: 56589-57817

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_110 0.0 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
2 Hb_000181_350 0.0926029327 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
3 Hb_000365_130 0.1066004392 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
4 Hb_004965_110 0.1135263441 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
5 Hb_083380_020 0.1144326185 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
6 Hb_000062_330 0.1151497583 - - unknown [Lotus japonicus]
7 Hb_002184_090 0.1222522378 - - DNA binding protein, putative [Ricinus communis]
8 Hb_010368_050 0.1223976396 - - PREDICTED: uncharacterized protein C1450.15 [Jatropha curcas]
9 Hb_000962_070 0.1227084242 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000244_170 0.125941946 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
11 Hb_000796_150 0.1263320374 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
12 Hb_001671_030 0.1289349849 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
13 Hb_001195_060 0.1293908809 - - Protein yrdA, putative [Ricinus communis]
14 Hb_002174_040 0.1300184918 - - DNAJ heat shock family protein [Theobroma cacao]
15 Hb_000832_190 0.1312559007 - - Rab3 [Hevea brasiliensis]
16 Hb_001951_130 0.1330076006 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
17 Hb_000127_140 0.1335274061 - - transporter-related family protein [Populus trichocarpa]
18 Hb_004223_050 0.1340313449 - - hexokinase [Manihot esculenta]
19 Hb_004257_010 0.1353400071 - - CMP-sialic acid transporter, putative [Ricinus communis]
20 Hb_005167_010 0.1359005941 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007101_110 Hb_007101_110 Hb_000181_350 Hb_000181_350 Hb_007101_110--Hb_000181_350 Hb_000365_130 Hb_000365_130 Hb_007101_110--Hb_000365_130 Hb_004965_110 Hb_004965_110 Hb_007101_110--Hb_004965_110 Hb_083380_020 Hb_083380_020 Hb_007101_110--Hb_083380_020 Hb_000062_330 Hb_000062_330 Hb_007101_110--Hb_000062_330 Hb_002184_090 Hb_002184_090 Hb_007101_110--Hb_002184_090 Hb_001663_040 Hb_001663_040 Hb_000181_350--Hb_001663_040 Hb_000057_110 Hb_000057_110 Hb_000181_350--Hb_000057_110 Hb_000200_300 Hb_000200_300 Hb_000181_350--Hb_000200_300 Hb_000684_030 Hb_000684_030 Hb_000181_350--Hb_000684_030 Hb_000181_350--Hb_000062_330 Hb_005167_010 Hb_005167_010 Hb_000365_130--Hb_005167_010 Hb_007975_060 Hb_007975_060 Hb_000365_130--Hb_007975_060 Hb_006132_090 Hb_006132_090 Hb_000365_130--Hb_006132_090 Hb_003119_060 Hb_003119_060 Hb_000365_130--Hb_003119_060 Hb_003935_060 Hb_003935_060 Hb_000365_130--Hb_003935_060 Hb_000365_130--Hb_004965_110 Hb_003266_030 Hb_003266_030 Hb_004965_110--Hb_003266_030 Hb_007904_230 Hb_007904_230 Hb_004965_110--Hb_007904_230 Hb_011671_260 Hb_011671_260 Hb_004965_110--Hb_011671_260 Hb_004965_110--Hb_006132_090 Hb_000926_080 Hb_000926_080 Hb_004965_110--Hb_000926_080 Hb_001900_140 Hb_001900_140 Hb_004965_110--Hb_001900_140 Hb_010368_050 Hb_010368_050 Hb_083380_020--Hb_010368_050 Hb_008147_090 Hb_008147_090 Hb_083380_020--Hb_008147_090 Hb_001951_130 Hb_001951_130 Hb_083380_020--Hb_001951_130 Hb_083380_020--Hb_000181_350 Hb_001511_260 Hb_001511_260 Hb_083380_020--Hb_001511_260 Hb_000244_170 Hb_000244_170 Hb_000062_330--Hb_000244_170 Hb_007811_040 Hb_007811_040 Hb_000062_330--Hb_007811_040 Hb_002687_120 Hb_002687_120 Hb_000062_330--Hb_002687_120 Hb_000832_190 Hb_000832_190 Hb_000062_330--Hb_000832_190 Hb_000890_130 Hb_000890_130 Hb_000062_330--Hb_000890_130 Hb_001195_060 Hb_001195_060 Hb_000062_330--Hb_001195_060 Hb_002184_090--Hb_001195_060 Hb_000127_140 Hb_000127_140 Hb_002184_090--Hb_000127_140 Hb_000329_210 Hb_000329_210 Hb_002184_090--Hb_000329_210 Hb_004257_010 Hb_004257_010 Hb_002184_090--Hb_004257_010 Hb_002184_090--Hb_008147_090 Hb_180343_010 Hb_180343_010 Hb_002184_090--Hb_180343_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88022 3.14876 19.983 22.4057 6.33805 4.73644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4959 12.8521 9.82601 3.39425 12.4152

CAGE analysis