Hb_007101_140

Information

Type -
Description -
Location Contig7101: 77457-80953
Sequence    

Annotation

kegg
ID rcu:RCOM_0394330
description cyclin d, putative
nr
ID KDP21306.1
description hypothetical protein JCGZ_21777 [Jatropha curcas]
swissprot
ID P42751
description Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3
trembl
ID A0A067JBV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21777 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin delta-1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55248: 77732-78508
cDNA
(Sanger)
(ID:Location)		 037_M05.ab1: 80081-80918

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_140 0.0 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
2 Hb_000152_880 0.074994901 - - -
3 Hb_007894_080 0.0826691998 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000017_140 0.0841101205 - - polygalacturonase, putative [Ricinus communis]
5 Hb_029639_030 0.0927790996 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
6 Hb_000181_220 0.0972997881 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
7 Hb_004162_140 0.0987629214 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
8 Hb_010264_010 0.108073692 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
9 Hb_006142_050 0.1110286522 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
10 Hb_001405_040 0.1146198543 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
11 Hb_033772_060 0.1163029532 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000639_010 0.1190226351 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
13 Hb_000416_090 0.1212882825 - - Aquaporin NIP1.1, putative [Ricinus communis]
14 Hb_004116_050 0.1320688797 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
15 Hb_000337_030 0.1321728143 - - amino acid transporter, putative [Ricinus communis]
16 Hb_168561_010 0.1322205448 - - PREDICTED: notchless protein homolog [Jatropha curcas]
17 Hb_000951_090 0.1324266787 - - Oligopeptide transporter, putative [Ricinus communis]
18 Hb_000621_030 0.1339279517 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
19 Hb_000152_120 0.1343232153 - - alpha-l-fucosidase, putative [Ricinus communis]
20 Hb_000162_200 0.1354879519 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007101_140 Hb_007101_140 Hb_000152_880 Hb_000152_880 Hb_007101_140--Hb_000152_880 Hb_007894_080 Hb_007894_080 Hb_007101_140--Hb_007894_080 Hb_000017_140 Hb_000017_140 Hb_007101_140--Hb_000017_140 Hb_029639_030 Hb_029639_030 Hb_007101_140--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_007101_140--Hb_000181_220 Hb_004162_140 Hb_004162_140 Hb_007101_140--Hb_004162_140 Hb_000152_880--Hb_000017_140 Hb_000152_880--Hb_007894_080 Hb_033772_060 Hb_033772_060 Hb_000152_880--Hb_033772_060 Hb_000152_880--Hb_029639_030 Hb_027506_030 Hb_027506_030 Hb_000152_880--Hb_027506_030 Hb_007894_080--Hb_033772_060 Hb_007894_080--Hb_000017_140 Hb_007894_080--Hb_029639_030 Hb_000162_200 Hb_000162_200 Hb_007894_080--Hb_000162_200 Hb_010264_010 Hb_010264_010 Hb_000017_140--Hb_010264_010 Hb_004466_090 Hb_004466_090 Hb_000017_140--Hb_004466_090 Hb_004804_010 Hb_004804_010 Hb_000017_140--Hb_004804_010 Hb_029639_030--Hb_000181_220 Hb_029639_030--Hb_033772_060 Hb_005892_040 Hb_005892_040 Hb_029639_030--Hb_005892_040 Hb_000977_030 Hb_000977_030 Hb_029639_030--Hb_000977_030 Hb_000181_220--Hb_033772_060 Hb_000181_220--Hb_007894_080 Hb_001488_350 Hb_001488_350 Hb_000181_220--Hb_001488_350 Hb_001405_040 Hb_001405_040 Hb_000181_220--Hb_001405_040 Hb_002783_180 Hb_002783_180 Hb_004162_140--Hb_002783_180 Hb_001675_040 Hb_001675_040 Hb_004162_140--Hb_001675_040 Hb_004162_140--Hb_000152_880 Hb_000140_500 Hb_000140_500 Hb_004162_140--Hb_000140_500 Hb_168561_010 Hb_168561_010 Hb_004162_140--Hb_168561_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0318437 0.303724 2.93338 4.50431 0.0177334 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.25707 4.2617

CAGE analysis