Hb_007101_150

Information

Type -
Description -
Location Contig7101: 90517-95405
Sequence    

Annotation

kegg
ID tcc:TCM_010207
description Thiol-disulfide oxidoreductase DCC
nr
ID XP_006438471.1
description hypothetical protein CICLE_v10033984mg [Citrus clementina]
swissprot
ID P40761
description Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168) GN=yuxK PE=3 SV=1
trembl
ID A0A067H4E8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028306mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55250: 90548-95406 , PASA_asmbl_55251: 94052-94472 , PASA_asmbl_55254: 91865-92245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_150 0.0 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
2 Hb_001828_090 0.0538517445 - - prohibitin, putative [Ricinus communis]
3 Hb_000056_340 0.0661832891 - - 60S ribosomal protein L34A [Hevea brasiliensis]
4 Hb_001512_070 0.0694765546 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
5 Hb_001257_080 0.069906029 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003018_200 0.0703349041 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
7 Hb_007741_050 0.0713083287 - - vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_001379_060 0.0764359808 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
9 Hb_000684_090 0.0780751714 transcription factor TF Family: S1Fa-like -
10 Hb_002205_080 0.0788278177 - - 40S ribosomal protein S26, putative [Ricinus communis]
11 Hb_000200_100 0.0797461198 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]
12 Hb_000970_010 0.0805650061 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
13 Hb_007672_010 0.081920282 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
14 Hb_000531_020 0.0822483906 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
15 Hb_008173_090 0.0824209953 - - glutathione peroxidase, putative [Ricinus communis]
16 Hb_000221_220 0.08309124 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
17 Hb_002603_100 0.0831804385 - - ATATH9, putative [Ricinus communis]
18 Hb_023386_080 0.0852933644 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
19 Hb_000703_140 0.086412294 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
20 Hb_003939_080 0.0887738885 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007101_150 Hb_007101_150 Hb_001828_090 Hb_001828_090 Hb_007101_150--Hb_001828_090 Hb_000056_340 Hb_000056_340 Hb_007101_150--Hb_000056_340 Hb_001512_070 Hb_001512_070 Hb_007101_150--Hb_001512_070 Hb_001257_080 Hb_001257_080 Hb_007101_150--Hb_001257_080 Hb_003018_200 Hb_003018_200 Hb_007101_150--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_007101_150--Hb_007741_050 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_011360_140 Hb_011360_140 Hb_001828_090--Hb_011360_140 Hb_001379_060 Hb_001379_060 Hb_001828_090--Hb_001379_060 Hb_001828_090--Hb_001512_070 Hb_000684_090 Hb_000684_090 Hb_001828_090--Hb_000684_090 Hb_000056_340--Hb_003018_200 Hb_007672_010 Hb_007672_010 Hb_000056_340--Hb_007672_010 Hb_000056_340--Hb_001828_090 Hb_024835_030 Hb_024835_030 Hb_000056_340--Hb_024835_030 Hb_004012_010 Hb_004012_010 Hb_000056_340--Hb_004012_010 Hb_003939_080 Hb_003939_080 Hb_001512_070--Hb_003939_080 Hb_012762_050 Hb_012762_050 Hb_001512_070--Hb_012762_050 Hb_002868_010 Hb_002868_010 Hb_001512_070--Hb_002868_010 Hb_001512_070--Hb_000684_090 Hb_002205_080 Hb_002205_080 Hb_001257_080--Hb_002205_080 Hb_001257_080--Hb_007741_050 Hb_002529_100 Hb_002529_100 Hb_001257_080--Hb_002529_100 Hb_022250_040 Hb_022250_040 Hb_001257_080--Hb_022250_040 Hb_000798_030 Hb_000798_030 Hb_001257_080--Hb_000798_030 Hb_001863_390 Hb_001863_390 Hb_003018_200--Hb_001863_390 Hb_002603_100 Hb_002603_100 Hb_003018_200--Hb_002603_100 Hb_008453_090 Hb_008453_090 Hb_003018_200--Hb_008453_090 Hb_007101_130 Hb_007101_130 Hb_003018_200--Hb_007101_130 Hb_007741_050--Hb_000798_030 Hb_007479_020 Hb_007479_020 Hb_007741_050--Hb_007479_020 Hb_000970_010 Hb_000970_010 Hb_007741_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_007741_050--Hb_001818_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3687 9.03122 8.6717 6.87389 21.4877 17.4851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3441 41.2094 24.018 7.91643 2.37188

CAGE analysis