Hb_007101_180

Information

Type -
Description -
Location Contig7101: 104748-109126
Sequence    

Annotation

kegg
ID cit:102620577
description DNA polymerase lambda-like
nr
ID XP_012092039.1
description PREDICTED: DNA polymerase beta [Jatropha curcas]
swissprot
ID P06766
description DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4
trembl
ID A0A067JBU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21772 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna polymerase lambda isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55258: 105222-105702 , PASA_asmbl_55259: 108180-108889
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_180 0.0 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
2 Hb_010080_060 0.0997095992 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_000227_380 0.1057934078 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
4 Hb_000589_040 0.1067067184 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
5 Hb_000342_090 0.1067559709 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
6 Hb_000264_100 0.1079063595 - - conserved hypothetical protein [Ricinus communis]
7 Hb_126643_010 0.114315085 - - Protein transport protein Sec24C, putative [Ricinus communis]
8 Hb_000529_260 0.1151657904 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
9 Hb_004718_010 0.1154656963 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]
10 Hb_001152_030 0.1177668831 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
11 Hb_000023_060 0.1179065245 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
12 Hb_007904_080 0.1183639575 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
13 Hb_000997_030 0.1191762648 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
14 Hb_111985_080 0.119260713 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
15 Hb_001221_150 0.1193303359 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
16 Hb_003866_020 0.1201593345 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000088_130 0.1201785847 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
18 Hb_002400_240 0.1202203618 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
19 Hb_001080_270 0.1211759933 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
20 Hb_000077_370 0.1222622319 - - PREDICTED: protein STABILIZED1 [Jatropha curcas]

Gene co-expression network

sample Hb_007101_180 Hb_007101_180 Hb_010080_060 Hb_010080_060 Hb_007101_180--Hb_010080_060 Hb_000227_380 Hb_000227_380 Hb_007101_180--Hb_000227_380 Hb_000589_040 Hb_000589_040 Hb_007101_180--Hb_000589_040 Hb_000342_090 Hb_000342_090 Hb_007101_180--Hb_000342_090 Hb_000264_100 Hb_000264_100 Hb_007101_180--Hb_000264_100 Hb_126643_010 Hb_126643_010 Hb_007101_180--Hb_126643_010 Hb_004310_050 Hb_004310_050 Hb_010080_060--Hb_004310_050 Hb_010080_060--Hb_000227_380 Hb_033152_080 Hb_033152_080 Hb_010080_060--Hb_033152_080 Hb_000002_440 Hb_000002_440 Hb_010080_060--Hb_000002_440 Hb_000997_090 Hb_000997_090 Hb_010080_060--Hb_000997_090 Hb_005122_080 Hb_005122_080 Hb_010080_060--Hb_005122_080 Hb_003866_020 Hb_003866_020 Hb_000227_380--Hb_003866_020 Hb_007849_020 Hb_007849_020 Hb_000227_380--Hb_007849_020 Hb_175338_020 Hb_175338_020 Hb_000227_380--Hb_175338_020 Hb_000239_070 Hb_000239_070 Hb_000227_380--Hb_000239_070 Hb_000227_380--Hb_000002_440 Hb_001080_270 Hb_001080_270 Hb_000227_380--Hb_001080_270 Hb_111985_080 Hb_111985_080 Hb_000589_040--Hb_111985_080 Hb_000023_060 Hb_000023_060 Hb_000589_040--Hb_000023_060 Hb_002301_080 Hb_002301_080 Hb_000589_040--Hb_002301_080 Hb_000088_130 Hb_000088_130 Hb_000589_040--Hb_000088_130 Hb_002400_240 Hb_002400_240 Hb_000589_040--Hb_002400_240 Hb_005143_030 Hb_005143_030 Hb_000589_040--Hb_005143_030 Hb_000342_090--Hb_007849_020 Hb_125092_020 Hb_125092_020 Hb_000342_090--Hb_125092_020 Hb_000342_090--Hb_000227_380 Hb_000342_090--Hb_000023_060 Hb_000417_160 Hb_000417_160 Hb_000342_090--Hb_000417_160 Hb_006816_300 Hb_006816_300 Hb_000342_090--Hb_006816_300 Hb_000120_610 Hb_000120_610 Hb_000264_100--Hb_000120_610 Hb_000997_030 Hb_000997_030 Hb_000264_100--Hb_000997_030 Hb_030565_090 Hb_030565_090 Hb_000264_100--Hb_030565_090 Hb_140049_020 Hb_140049_020 Hb_000264_100--Hb_140049_020 Hb_000594_020 Hb_000594_020 Hb_000264_100--Hb_000594_020 Hb_004899_070 Hb_004899_070 Hb_000264_100--Hb_004899_070 Hb_002255_070 Hb_002255_070 Hb_126643_010--Hb_002255_070 Hb_003544_100 Hb_003544_100 Hb_126643_010--Hb_003544_100 Hb_000627_080 Hb_000627_080 Hb_126643_010--Hb_000627_080 Hb_003052_150 Hb_003052_150 Hb_126643_010--Hb_003052_150 Hb_116929_010 Hb_116929_010 Hb_126643_010--Hb_116929_010 Hb_003952_150 Hb_003952_150 Hb_126643_010--Hb_003952_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.87784 9.72914 2.11642 2.50152 13.2469 10.2123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11691 1.93178 6.41117 9.05797 2.4175

CAGE analysis