Hb_007101_200

Information

Type -
Description -
Location Contig7101: 112642-114718
Sequence    

Annotation

kegg
ID rcu:RCOM_0699960
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012092036.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
swissprot
ID Q944S1
description DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana GN=RH22 PE=2 SV=1
trembl
ID A0A067JMR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21771 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dead-box atp-dependent rna helicase 22 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55260: 111648-111926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_200 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
2 Hb_003206_020 0.1420174827 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
3 Hb_000832_130 0.1596343448 - - PREDICTED: pentatricopeptide repeat-containing protein At2g39620 [Jatropha curcas]
4 Hb_000951_110 0.1662600922 - - heat shock protein, putative [Ricinus communis]
5 Hb_000959_090 0.177084556 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000136_040 0.1771216566 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
7 Hb_009543_020 0.1772322501 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
8 Hb_002276_060 0.1772348608 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
9 Hb_000069_320 0.179782825 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
10 Hb_001009_100 0.182782396 - - -
11 Hb_000170_190 0.1828662307 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
12 Hb_006452_090 0.1843434279 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
13 Hb_005527_030 0.1860730527 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
14 Hb_000743_050 0.1860958372 - - unnamed protein product [Vitis vinifera]
15 Hb_001912_080 0.1874909899 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
16 Hb_000768_190 0.1875197857 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
17 Hb_064903_010 0.1926050512 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
18 Hb_007108_030 0.1926656422 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000010_180 0.1931639877 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
20 Hb_003001_150 0.1934120507 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007101_200 Hb_007101_200 Hb_003206_020 Hb_003206_020 Hb_007101_200--Hb_003206_020 Hb_000832_130 Hb_000832_130 Hb_007101_200--Hb_000832_130 Hb_000951_110 Hb_000951_110 Hb_007101_200--Hb_000951_110 Hb_000959_090 Hb_000959_090 Hb_007101_200--Hb_000959_090 Hb_000136_040 Hb_000136_040 Hb_007101_200--Hb_000136_040 Hb_009543_020 Hb_009543_020 Hb_007101_200--Hb_009543_020 Hb_020665_010 Hb_020665_010 Hb_003206_020--Hb_020665_010 Hb_145915_010 Hb_145915_010 Hb_003206_020--Hb_145915_010 Hb_009270_010 Hb_009270_010 Hb_003206_020--Hb_009270_010 Hb_003206_020--Hb_000136_040 Hb_002276_060 Hb_002276_060 Hb_003206_020--Hb_002276_060 Hb_000832_130--Hb_000951_110 Hb_004718_010 Hb_004718_010 Hb_000832_130--Hb_004718_010 Hb_010578_060 Hb_010578_060 Hb_000832_130--Hb_010578_060 Hb_064903_010 Hb_064903_010 Hb_000832_130--Hb_064903_010 Hb_002471_210 Hb_002471_210 Hb_000832_130--Hb_002471_210 Hb_111985_080 Hb_111985_080 Hb_000832_130--Hb_111985_080 Hb_020665_030 Hb_020665_030 Hb_000951_110--Hb_020665_030 Hb_000671_110 Hb_000671_110 Hb_000951_110--Hb_000671_110 Hb_000951_110--Hb_002471_210 Hb_002301_260 Hb_002301_260 Hb_000951_110--Hb_002301_260 Hb_007108_030 Hb_007108_030 Hb_000951_110--Hb_007108_030 Hb_001912_080 Hb_001912_080 Hb_000959_090--Hb_001912_080 Hb_000959_090--Hb_000136_040 Hb_001780_090 Hb_001780_090 Hb_000959_090--Hb_001780_090 Hb_000032_470 Hb_000032_470 Hb_000959_090--Hb_000032_470 Hb_000959_090--Hb_003206_020 Hb_000136_060 Hb_000136_060 Hb_000136_040--Hb_000136_060 Hb_003623_030 Hb_003623_030 Hb_000136_040--Hb_003623_030 Hb_000470_080 Hb_000470_080 Hb_000136_040--Hb_000470_080 Hb_000743_050 Hb_000743_050 Hb_000136_040--Hb_000743_050 Hb_005205_020 Hb_005205_020 Hb_000136_040--Hb_005205_020 Hb_002028_170 Hb_002028_170 Hb_000136_040--Hb_002028_170 Hb_002903_080 Hb_002903_080 Hb_009543_020--Hb_002903_080 Hb_000170_190 Hb_000170_190 Hb_009543_020--Hb_000170_190 Hb_081879_030 Hb_081879_030 Hb_009543_020--Hb_081879_030 Hb_000523_090 Hb_000523_090 Hb_009543_020--Hb_000523_090 Hb_002601_130 Hb_002601_130 Hb_009543_020--Hb_002601_130 Hb_000342_080 Hb_000342_080 Hb_009543_020--Hb_000342_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.578204 0.690201 0.325995 0.126214 2.26197 2.55324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.203719 0.640896 0.8108 1.03104 1.5565

CAGE analysis