Hb_007101_220

Information

Type -
Description -
Location Contig7101: 122132-122711
Sequence    

Annotation

kegg
ID rcu:RCOM_0699940
description Gibberellin-regulated protein 3 precursor, putative
nr
ID XP_002520219.1
description Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
swissprot
ID Q93X17
description Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1
trembl
ID B9S2K0
description Gibberellin-regulated protein 3, putative OS=Ricinus communis GN=RCOM_0699940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_220 0.0 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
2 Hb_006810_070 0.1936875265 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
3 Hb_030827_050 0.2517940895 - - hypothetical protein CISIN_1g040641mg, partial [Citrus sinensis]
4 Hb_000905_150 0.2750664186 - - Cytochrome P450 [Theobroma cacao]
5 Hb_003117_050 0.2888735907 - - -
6 Hb_003238_030 0.2983742181 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
7 Hb_151497_010 0.2988410369 - - -
8 Hb_006083_060 0.3137142324 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
9 Hb_000380_200 0.3148150743 - - -
10 Hb_010565_020 0.3199991102 - - -
11 Hb_000061_380 0.3222399586 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000982_040 0.3254648494 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000295_010 0.3259764742 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_001329_240 0.3400212037 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
15 Hb_012098_050 0.3413231662 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
16 Hb_000123_250 0.344254503 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
17 Hb_022250_120 0.3470440802 - - PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
18 Hb_005803_020 0.348593649 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
19 Hb_003640_030 0.3549737519 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
20 Hb_000069_080 0.3616040836 - - PREDICTED: laccase-6 [Jatropha curcas]

Gene co-expression network

sample Hb_007101_220 Hb_007101_220 Hb_006810_070 Hb_006810_070 Hb_007101_220--Hb_006810_070 Hb_030827_050 Hb_030827_050 Hb_007101_220--Hb_030827_050 Hb_000905_150 Hb_000905_150 Hb_007101_220--Hb_000905_150 Hb_003117_050 Hb_003117_050 Hb_007101_220--Hb_003117_050 Hb_003238_030 Hb_003238_030 Hb_007101_220--Hb_003238_030 Hb_151497_010 Hb_151497_010 Hb_007101_220--Hb_151497_010 Hb_000123_250 Hb_000123_250 Hb_006810_070--Hb_000123_250 Hb_006810_070--Hb_003238_030 Hb_010565_020 Hb_010565_020 Hb_006810_070--Hb_010565_020 Hb_006810_070--Hb_030827_050 Hb_006083_060 Hb_006083_060 Hb_006810_070--Hb_006083_060 Hb_030827_050--Hb_151497_010 Hb_000908_010 Hb_000908_010 Hb_030827_050--Hb_000908_010 Hb_001545_230 Hb_001545_230 Hb_030827_050--Hb_001545_230 Hb_118346_010 Hb_118346_010 Hb_030827_050--Hb_118346_010 Hb_005510_010 Hb_005510_010 Hb_000905_150--Hb_005510_010 Hb_000181_440 Hb_000181_440 Hb_000905_150--Hb_000181_440 Hb_003096_040 Hb_003096_040 Hb_000905_150--Hb_003096_040 Hb_000101_220 Hb_000101_220 Hb_000905_150--Hb_000101_220 Hb_003656_120 Hb_003656_120 Hb_000905_150--Hb_003656_120 Hb_011468_010 Hb_011468_010 Hb_003117_050--Hb_011468_010 Hb_003117_050--Hb_000905_150 Hb_046198_020 Hb_046198_020 Hb_003117_050--Hb_046198_020 Hb_000076_170 Hb_000076_170 Hb_003117_050--Hb_000076_170 Hb_003581_160 Hb_003581_160 Hb_003117_050--Hb_003581_160 Hb_000380_200 Hb_000380_200 Hb_003238_030--Hb_000380_200 Hb_000295_010 Hb_000295_010 Hb_003238_030--Hb_000295_010 Hb_178884_010 Hb_178884_010 Hb_003238_030--Hb_178884_010 Hb_000189_420 Hb_000189_420 Hb_003238_030--Hb_000189_420 Hb_000640_150 Hb_000640_150 Hb_003238_030--Hb_000640_150 Hb_010863_040 Hb_010863_040 Hb_151497_010--Hb_010863_040 Hb_000069_080 Hb_000069_080 Hb_151497_010--Hb_000069_080 Hb_002835_130 Hb_002835_130 Hb_151497_010--Hb_002835_130 Hb_151497_010--Hb_001545_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76183 2.77456 3.62945 0.396072 15.2366 2.75504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.3164 0

CAGE analysis