Hb_007101_230

Information

Type -
Description -
Location Contig7101: 125576-133326
Sequence    

Annotation

kegg
ID rcu:RCOM_0699930
description leucine rich repeat-containing protein, putative
nr
ID XP_002520218.1
description leucine rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q7RTR2
description Protein NLRC3 OS=Homo sapiens GN=NLRC3 PE=2 SV=2
trembl
ID B9S2J9
description Leucine rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0699930 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein nlrc3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_230 0.0 - - leucine rich repeat-containing protein, putative [Ricinus communis]
2 Hb_001268_130 0.261146839 - - hypothetical protein JCGZ_26837 [Jatropha curcas]
3 Hb_183623_010 0.2745403678 - - aldo-keto reductase, putative [Ricinus communis]
4 Hb_008014_030 0.2990765141 - - Aquaporin NIP1.1, putative [Ricinus communis]
5 Hb_026527_020 0.2999529524 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
6 Hb_000297_020 0.3129072862 - - PREDICTED: protein phosphatase 2C 77 [Jatropha curcas]
7 Hb_028486_070 0.3171201532 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
8 Hb_000866_250 0.3230706268 - - acyl-CoA thioesterase, putative [Ricinus communis]
9 Hb_105328_030 0.323314317 - - Putative retroelement [Oryza sativa Japonica Group]
10 Hb_131060_010 0.3252413609 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
11 Hb_007885_050 0.3272087587 - - PREDICTED: lignin-forming anionic peroxidase-like [Jatropha curcas]
12 Hb_001080_010 0.3305950501 - - -
13 Hb_004208_130 0.3326291535 - - hypothetical protein JCGZ_16532 [Jatropha curcas]
14 Hb_007153_040 0.3423668637 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
15 Hb_008725_040 0.3492920269 - - PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]
16 Hb_162275_020 0.349354356 - - phosphate transporter [Manihot esculenta]
17 Hb_001946_030 0.3498345595 - - grr1, plant, putative [Ricinus communis]
18 Hb_080147_100 0.3510210717 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN [Jatropha curcas]
19 Hb_006420_090 0.3523392588 - - PREDICTED: zinc finger protein 5 [Jatropha curcas]
20 Hb_011016_010 0.3528883089 - - PREDICTED: auxin response factor 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_007101_230 Hb_007101_230 Hb_001268_130 Hb_001268_130 Hb_007101_230--Hb_001268_130 Hb_183623_010 Hb_183623_010 Hb_007101_230--Hb_183623_010 Hb_008014_030 Hb_008014_030 Hb_007101_230--Hb_008014_030 Hb_026527_020 Hb_026527_020 Hb_007101_230--Hb_026527_020 Hb_000297_020 Hb_000297_020 Hb_007101_230--Hb_000297_020 Hb_028486_070 Hb_028486_070 Hb_007101_230--Hb_028486_070 Hb_001268_130--Hb_026527_020 Hb_007072_020 Hb_007072_020 Hb_001268_130--Hb_007072_020 Hb_000032_580 Hb_000032_580 Hb_001268_130--Hb_000032_580 Hb_003038_170 Hb_003038_170 Hb_001268_130--Hb_003038_170 Hb_000056_330 Hb_000056_330 Hb_001268_130--Hb_000056_330 Hb_001355_130 Hb_001355_130 Hb_183623_010--Hb_001355_130 Hb_183623_010--Hb_000297_020 Hb_001946_030 Hb_001946_030 Hb_183623_010--Hb_001946_030 Hb_138710_010 Hb_138710_010 Hb_183623_010--Hb_138710_010 Hb_094437_060 Hb_094437_060 Hb_183623_010--Hb_094437_060 Hb_000300_130 Hb_000300_130 Hb_183623_010--Hb_000300_130 Hb_003435_060 Hb_003435_060 Hb_008014_030--Hb_003435_060 Hb_008014_030--Hb_000300_130 Hb_001045_050 Hb_001045_050 Hb_008014_030--Hb_001045_050 Hb_001101_030 Hb_001101_030 Hb_008014_030--Hb_001101_030 Hb_008014_030--Hb_183623_010 Hb_000140_160 Hb_000140_160 Hb_008014_030--Hb_000140_160 Hb_006420_090 Hb_006420_090 Hb_026527_020--Hb_006420_090 Hb_007885_050 Hb_007885_050 Hb_026527_020--Hb_007885_050 Hb_011016_010 Hb_011016_010 Hb_026527_020--Hb_011016_010 Hb_000836_490 Hb_000836_490 Hb_026527_020--Hb_000836_490 Hb_026527_020--Hb_003038_170 Hb_017170_030 Hb_017170_030 Hb_000297_020--Hb_017170_030 Hb_007153_040 Hb_007153_040 Hb_000297_020--Hb_007153_040 Hb_105602_010 Hb_105602_010 Hb_000297_020--Hb_105602_010 Hb_004208_130 Hb_004208_130 Hb_000297_020--Hb_004208_130 Hb_162275_020 Hb_162275_020 Hb_000297_020--Hb_162275_020 Hb_000614_170 Hb_000614_170 Hb_000297_020--Hb_000614_170 Hb_000948_100 Hb_000948_100 Hb_028486_070--Hb_000948_100 Hb_004157_110 Hb_004157_110 Hb_028486_070--Hb_004157_110 Hb_020580_010 Hb_020580_010 Hb_028486_070--Hb_020580_010 Hb_131060_010 Hb_131060_010 Hb_028486_070--Hb_131060_010 Hb_013429_020 Hb_013429_020 Hb_028486_070--Hb_013429_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0101119 0 0.0450969 0.0114507 0.0227705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.109489 0.0825819 0.183317 0

CAGE analysis