Hb_007101_260

Information

Type -
Description -
Location Contig7101: 143758-150853
Sequence    

Annotation

kegg
ID rcu:RCOM_0699900
description altered response to gravity (arg1), plant, putative
nr
ID XP_002520215.1
description altered response to gravity (arg1), plant, putative [Ricinus communis]
swissprot
ID Q8VXV4
description Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1
trembl
ID B9S2J6
description Altered response to gravity (Arg1), plant, putative OS=Ricinus communis GN=RCOM_0699900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55263: 143952-150733 , PASA_asmbl_55264: 145662-146060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_260 0.0 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
2 Hb_003050_360 0.0890158258 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
3 Hb_000327_360 0.0974630584 - - unnamed protein product [Coffea canephora]
4 Hb_161396_010 0.0994640886 - - hypothetical protein F383_26394 [Gossypium arboreum]
5 Hb_000193_340 0.1000573413 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
6 Hb_000283_140 0.102574527 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
7 Hb_006120_060 0.1079056588 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
8 Hb_002391_320 0.1103233187 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
9 Hb_000689_050 0.1111726627 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011174_040 0.1119060257 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000076_030 0.1121607603 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
12 Hb_000357_070 0.1131589118 - - -
13 Hb_000749_020 0.1150510745 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
14 Hb_005074_040 0.115304242 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000928_120 0.1195215544 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
16 Hb_012807_150 0.1205449304 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
17 Hb_000808_150 0.1247304516 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
18 Hb_000227_280 0.126040909 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
19 Hb_000115_360 0.1266656837 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
20 Hb_000086_210 0.1282697706 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_007101_260 Hb_007101_260 Hb_003050_360 Hb_003050_360 Hb_007101_260--Hb_003050_360 Hb_000327_360 Hb_000327_360 Hb_007101_260--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_007101_260--Hb_161396_010 Hb_000193_340 Hb_000193_340 Hb_007101_260--Hb_000193_340 Hb_000283_140 Hb_000283_140 Hb_007101_260--Hb_000283_140 Hb_006120_060 Hb_006120_060 Hb_007101_260--Hb_006120_060 Hb_000689_050 Hb_000689_050 Hb_003050_360--Hb_000689_050 Hb_112064_010 Hb_112064_010 Hb_003050_360--Hb_112064_010 Hb_004545_080 Hb_004545_080 Hb_003050_360--Hb_004545_080 Hb_011174_040 Hb_011174_040 Hb_003050_360--Hb_011174_040 Hb_001377_530 Hb_001377_530 Hb_003050_360--Hb_001377_530 Hb_012807_150 Hb_012807_150 Hb_000327_360--Hb_012807_150 Hb_005074_040 Hb_005074_040 Hb_000327_360--Hb_005074_040 Hb_000327_360--Hb_006120_060 Hb_000327_360--Hb_000283_140 Hb_000808_150 Hb_000808_150 Hb_000327_360--Hb_000808_150 Hb_000076_030 Hb_000076_030 Hb_161396_010--Hb_000076_030 Hb_161396_010--Hb_000193_340 Hb_161396_010--Hb_000808_150 Hb_048476_140 Hb_048476_140 Hb_161396_010--Hb_048476_140 Hb_002759_220 Hb_002759_220 Hb_161396_010--Hb_002759_220 Hb_006153_160 Hb_006153_160 Hb_000193_340--Hb_006153_160 Hb_000193_340--Hb_002759_220 Hb_000193_340--Hb_000808_150 Hb_000328_010 Hb_000328_010 Hb_000193_340--Hb_000328_010 Hb_000283_140--Hb_012807_150 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220 Hb_006120_060--Hb_012807_150 Hb_000622_330 Hb_000622_330 Hb_006120_060--Hb_000622_330 Hb_006120_060--Hb_000689_050 Hb_006120_060--Hb_000638_060 Hb_006120_060--Hb_000283_140 Hb_010050_020 Hb_010050_020 Hb_006120_060--Hb_010050_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03245 5.93681 16.9994 21.3463 0.827643 1.14299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.42691 3.2933 3.04762 5.57102 14.6109

CAGE analysis