Hb_007101_300

Information

Type -
Description -
Location Contig7101: 177176-200390
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15650g
description POPTRDRAFT_799027; hypothetical protein
nr
ID XP_012083466.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
swissprot
ID Q9ZUW3
description Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
trembl
ID B9GPW3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s15650g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55270: 183179-183380 , PASA_asmbl_55272: 184740-191604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_300 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
2 Hb_003389_040 0.0538534081 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
3 Hb_000032_380 0.0585349075 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008226_060 0.0618660409 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
5 Hb_001225_080 0.0719825253 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]
6 Hb_000417_040 0.0763964529 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
7 Hb_005489_060 0.0772958839 - - Anamorsin, putative [Ricinus communis]
8 Hb_001278_100 0.0844830834 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
9 Hb_032225_010 0.0851380224 - - protein phosphatase 2c, putative [Ricinus communis]
10 Hb_000373_070 0.0858079189 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
11 Hb_000406_080 0.0867407992 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
12 Hb_002205_110 0.0869736313 - - conserved hypothetical protein [Ricinus communis]
13 Hb_089032_030 0.0904560315 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
14 Hb_154948_040 0.09070624 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
15 Hb_001936_010 0.0907564103 - - hypothetical protein Csa_2G348280 [Cucumis sativus]
16 Hb_003151_040 0.0917129331 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
17 Hb_009615_070 0.0939383163 - - type X protein phosphatase-II [Populus trichocarpa]
18 Hb_000340_180 0.0945934484 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
19 Hb_000030_030 0.0952190516 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
20 Hb_005846_040 0.0953257416 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]

Gene co-expression network

sample Hb_007101_300 Hb_007101_300 Hb_003389_040 Hb_003389_040 Hb_007101_300--Hb_003389_040 Hb_000032_380 Hb_000032_380 Hb_007101_300--Hb_000032_380 Hb_008226_060 Hb_008226_060 Hb_007101_300--Hb_008226_060 Hb_001225_080 Hb_001225_080 Hb_007101_300--Hb_001225_080 Hb_000417_040 Hb_000417_040 Hb_007101_300--Hb_000417_040 Hb_005489_060 Hb_005489_060 Hb_007101_300--Hb_005489_060 Hb_003389_040--Hb_008226_060 Hb_003389_040--Hb_000032_380 Hb_003389_040--Hb_000417_040 Hb_000357_110 Hb_000357_110 Hb_003389_040--Hb_000357_110 Hb_156635_010 Hb_156635_010 Hb_003389_040--Hb_156635_010 Hb_001278_100 Hb_001278_100 Hb_000032_380--Hb_001278_100 Hb_000032_380--Hb_000417_040 Hb_005054_350 Hb_005054_350 Hb_000032_380--Hb_005054_350 Hb_000032_380--Hb_008226_060 Hb_002205_110 Hb_002205_110 Hb_008226_060--Hb_002205_110 Hb_010997_080 Hb_010997_080 Hb_008226_060--Hb_010997_080 Hb_008226_060--Hb_000417_040 Hb_001703_060 Hb_001703_060 Hb_001225_080--Hb_001703_060 Hb_000030_030 Hb_000030_030 Hb_001225_080--Hb_000030_030 Hb_000406_080 Hb_000406_080 Hb_001225_080--Hb_000406_080 Hb_000331_200 Hb_000331_200 Hb_001225_080--Hb_000331_200 Hb_001225_080--Hb_000032_380 Hb_000417_040--Hb_000406_080 Hb_005846_040 Hb_005846_040 Hb_000417_040--Hb_005846_040 Hb_000032_270 Hb_000032_270 Hb_000417_040--Hb_000032_270 Hb_001279_150 Hb_001279_150 Hb_005489_060--Hb_001279_150 Hb_002473_130 Hb_002473_130 Hb_005489_060--Hb_002473_130 Hb_002182_080 Hb_002182_080 Hb_005489_060--Hb_002182_080 Hb_002271_020 Hb_002271_020 Hb_005489_060--Hb_002271_020 Hb_000215_110 Hb_000215_110 Hb_005489_060--Hb_000215_110 Hb_000783_010 Hb_000783_010 Hb_005489_060--Hb_000783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.900187 1.4183 1.20325 1.96297 0.962951 2.02106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79906 2.3684 1.69478 1.11471 0.898665

CAGE analysis