Hb_007103_020

Information

Type -
Description -
Location Contig7103: 52468-53460
Sequence    

Annotation

kegg
ID pop:POPTR_0007s04191g
description POPTRDRAFT_562471; hypothetical protein
nr
ID XP_002309917.1
description hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HES4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s04191g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55275: 52881-53232
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007103_020 0.0 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
2 Hb_000258_230 0.0893297379 - - conserved hypothetical protein [Ricinus communis]
3 Hb_027892_050 0.0930589731 - - hypothetical protein PHAVU_009G226400g [Phaseolus vulgaris]
4 Hb_009771_040 0.0988852499 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
5 Hb_152277_010 0.0989559276 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
6 Hb_002250_140 0.1029740934 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
7 Hb_005790_010 0.1073041245 - - hypothetical protein POPTR_0004s24080g [Populus trichocarpa]
8 Hb_026050_010 0.1096270912 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_002168_070 0.1120207845 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
10 Hb_000201_010 0.1122339342 - - unnamed protein product [Vitis vinifera]
11 Hb_000956_100 0.1162985413 - - Cucumisin precursor, putative [Ricinus communis]
12 Hb_002785_010 0.1181024825 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
13 Hb_000622_030 0.1199295073 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]
14 Hb_001305_020 0.1203491471 - - PREDICTED: uncharacterized protein LOC102623247 [Citrus sinensis]
15 Hb_005051_010 0.1241731307 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
16 Hb_002066_010 0.1245545144 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
17 Hb_000270_750 0.1260685434 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
18 Hb_002335_010 0.1264582361 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
19 Hb_000369_040 0.1283791303 - - Ankyrin repeat family protein, putative [Theobroma cacao]
20 Hb_001158_250 0.1289965421 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007103_020 Hb_007103_020 Hb_000258_230 Hb_000258_230 Hb_007103_020--Hb_000258_230 Hb_027892_050 Hb_027892_050 Hb_007103_020--Hb_027892_050 Hb_009771_040 Hb_009771_040 Hb_007103_020--Hb_009771_040 Hb_152277_010 Hb_152277_010 Hb_007103_020--Hb_152277_010 Hb_002250_140 Hb_002250_140 Hb_007103_020--Hb_002250_140 Hb_005790_010 Hb_005790_010 Hb_007103_020--Hb_005790_010 Hb_000258_230--Hb_009771_040 Hb_000258_230--Hb_002250_140 Hb_000258_230--Hb_152277_010 Hb_026050_010 Hb_026050_010 Hb_000258_230--Hb_026050_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010 Hb_000956_100 Hb_000956_100 Hb_027892_050--Hb_000956_100 Hb_002335_010 Hb_002335_010 Hb_027892_050--Hb_002335_010 Hb_030949_010 Hb_030949_010 Hb_027892_050--Hb_030949_010 Hb_001305_020 Hb_001305_020 Hb_027892_050--Hb_001305_020 Hb_027892_050--Hb_002250_140 Hb_002168_070 Hb_002168_070 Hb_009771_040--Hb_002168_070 Hb_009771_040--Hb_026050_010 Hb_009771_040--Hb_002250_140 Hb_000434_060 Hb_000434_060 Hb_009771_040--Hb_000434_060 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020 Hb_000983_130 Hb_000983_130 Hb_152277_010--Hb_000983_130 Hb_004102_200 Hb_004102_200 Hb_152277_010--Hb_004102_200 Hb_152277_010--Hb_005790_010 Hb_152277_010--Hb_009771_040 Hb_002250_140--Hb_026050_010 Hb_002250_140--Hb_173107_020 Hb_002250_140--Hb_002335_010 Hb_005790_010--Hb_000258_230 Hb_001158_250 Hb_001158_250 Hb_005790_010--Hb_001158_250 Hb_000622_030 Hb_000622_030 Hb_005790_010--Hb_000622_030 Hb_001232_040 Hb_001232_040 Hb_005790_010--Hb_001232_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 19.0171 5.38615 24.9136 0.0671701 0.098861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.160828 0.0739718 1.68187 21.0462

CAGE analysis