Hb_007113_030

Information

Type -
Description -
Location Contig7113: 24260-26235
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007113_030 0.0 - - -
2 Hb_003020_340 0.1617159 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
3 Hb_135673_010 0.1685444124 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
4 Hb_152868_010 0.1702627675 rubber biosynthesis Gene Name: REF5 small rubber particle protein [Hevea brasiliensis]
5 Hb_005356_030 0.1702870593 - - protein binding protein, putative [Ricinus communis]
6 Hb_103452_010 0.1719514374 - - hypothetical protein VITISV_027174 [Vitis vinifera]
7 Hb_000002_150 0.172597889 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001006_050 0.178476038 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
9 Hb_003480_010 0.192247518 - - cytochrome P450 family protein [Populus trichocarpa]
10 Hb_004116_090 0.2002395883 - - -
11 Hb_002498_290 0.2014124959 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
12 Hb_000161_230 0.2039885518 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_002559_010 0.2052616595 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
14 Hb_001633_120 0.2065658937 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
15 Hb_000365_150 0.2070534586 - - GTP binding protein, putative [Ricinus communis]
16 Hb_001269_120 0.2077570796 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
17 Hb_151094_020 0.2082413833 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
18 Hb_000679_280 0.2084846233 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
19 Hb_030736_030 0.2097352745 - - hypothetical protein VITISV_006651 [Vitis vinifera]
20 Hb_178252_010 0.2119491795 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]

Gene co-expression network

sample Hb_007113_030 Hb_007113_030 Hb_003020_340 Hb_003020_340 Hb_007113_030--Hb_003020_340 Hb_135673_010 Hb_135673_010 Hb_007113_030--Hb_135673_010 Hb_152868_010 Hb_152868_010 Hb_007113_030--Hb_152868_010 Hb_005356_030 Hb_005356_030 Hb_007113_030--Hb_005356_030 Hb_103452_010 Hb_103452_010 Hb_007113_030--Hb_103452_010 Hb_000002_150 Hb_000002_150 Hb_007113_030--Hb_000002_150 Hb_003020_340--Hb_000002_150 Hb_000925_120 Hb_000925_120 Hb_003020_340--Hb_000925_120 Hb_055154_010 Hb_055154_010 Hb_003020_340--Hb_055154_010 Hb_000147_010 Hb_000147_010 Hb_003020_340--Hb_000147_010 Hb_003020_340--Hb_005356_030 Hb_003480_010 Hb_003480_010 Hb_003020_340--Hb_003480_010 Hb_135673_010--Hb_103452_010 Hb_001006_050 Hb_001006_050 Hb_135673_010--Hb_001006_050 Hb_135673_010--Hb_005356_030 Hb_004116_090 Hb_004116_090 Hb_135673_010--Hb_004116_090 Hb_151094_020 Hb_151094_020 Hb_135673_010--Hb_151094_020 Hb_002498_290 Hb_002498_290 Hb_135673_010--Hb_002498_290 Hb_152868_010--Hb_000925_120 Hb_152868_010--Hb_055154_010 Hb_116783_010 Hb_116783_010 Hb_152868_010--Hb_116783_010 Hb_001633_120 Hb_001633_120 Hb_152868_010--Hb_001633_120 Hb_090510_010 Hb_090510_010 Hb_152868_010--Hb_090510_010 Hb_005356_030--Hb_103452_010 Hb_005356_030--Hb_001006_050 Hb_005356_030--Hb_004116_090 Hb_005356_030--Hb_151094_020 Hb_005356_030--Hb_000002_150 Hb_103452_010--Hb_001006_050 Hb_103452_010--Hb_004116_090 Hb_103452_010--Hb_151094_020 Hb_103452_010--Hb_000002_150 Hb_160814_010 Hb_160814_010 Hb_000002_150--Hb_160814_010 Hb_000002_150--Hb_000147_010 Hb_000002_150--Hb_000925_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136136 0 0.956637 0.776104 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28789 0

CAGE analysis