Hb_007120_070

Information

Type -
Description -
Location Contig7120: 59880-63167
Sequence    

Annotation

kegg
ID pop:POPTR_0010s21900g
description POPTRDRAFT_567499; hydrolase family protein
nr
ID XP_012073355.1
description PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
swissprot
ID Q9C942
description Caffeoylshikimate esterase OS=Arabidopsis thaliana GN=CSE PE=1 SV=1
trembl
ID A0A067LNR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06630 PE=4 SV=1
Gene Ontology
ID GO:0016787
description caffeoylshikimate esterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55337: 59884-63080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007120_070 0.0 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
2 Hb_003020_310 0.0966550919 - - glycosyltransferase, putative [Ricinus communis]
3 Hb_029584_140 0.1104724676 - - senescence-associated family protein [Populus trichocarpa]
4 Hb_000178_110 0.1136409566 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003038_180 0.1196255917 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
6 Hb_000062_580 0.1219506457 - - ATP binding protein, putative [Ricinus communis]
7 Hb_001035_040 0.1233728184 - - unnamed protein product [Coffea canephora]
8 Hb_023214_010 0.1313259947 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
9 Hb_149683_010 0.1373282904 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
10 Hb_000836_500 0.138824411 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
11 Hb_000526_020 0.1397521296 - - thioredoxin-like family protein [Hevea brasiliensis]
12 Hb_001671_060 0.1418372183 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
13 Hb_003581_090 0.1419950985 - - PREDICTED: galactose oxidase [Jatropha curcas]
14 Hb_000005_030 0.146403037 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
15 Hb_000580_170 0.1474873172 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
16 Hb_005615_070 0.1484441446 - - Rab7 [Hevea brasiliensis]
17 Hb_000107_070 0.1490289328 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
18 Hb_003540_230 0.149043902 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
19 Hb_006816_440 0.1493039978 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_012799_060 0.1494163039 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_007120_070 Hb_007120_070 Hb_003020_310 Hb_003020_310 Hb_007120_070--Hb_003020_310 Hb_029584_140 Hb_029584_140 Hb_007120_070--Hb_029584_140 Hb_000178_110 Hb_000178_110 Hb_007120_070--Hb_000178_110 Hb_003038_180 Hb_003038_180 Hb_007120_070--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_007120_070--Hb_000062_580 Hb_001035_040 Hb_001035_040 Hb_007120_070--Hb_001035_040 Hb_078633_010 Hb_078633_010 Hb_003020_310--Hb_078633_010 Hb_000077_410 Hb_000077_410 Hb_003020_310--Hb_000077_410 Hb_023214_010 Hb_023214_010 Hb_003020_310--Hb_023214_010 Hb_148121_010 Hb_148121_010 Hb_003020_310--Hb_148121_010 Hb_003020_310--Hb_001035_040 Hb_003540_230 Hb_003540_230 Hb_029584_140--Hb_003540_230 Hb_029584_140--Hb_003038_180 Hb_012799_060 Hb_012799_060 Hb_029584_140--Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_029584_140--Hb_000580_170 Hb_030765_020 Hb_030765_020 Hb_029584_140--Hb_030765_020 Hb_000836_500 Hb_000836_500 Hb_000178_110--Hb_000836_500 Hb_000178_110--Hb_029584_140 Hb_012725_110 Hb_012725_110 Hb_000178_110--Hb_012725_110 Hb_000178_110--Hb_012799_060 Hb_000178_110--Hb_000580_170 Hb_003038_180--Hb_000062_580 Hb_001999_120 Hb_001999_120 Hb_003038_180--Hb_001999_120 Hb_001722_040 Hb_001722_040 Hb_003038_180--Hb_001722_040 Hb_003038_180--Hb_003540_230 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030 Hb_000526_020 Hb_000526_020 Hb_000062_580--Hb_000526_020 Hb_000062_580--Hb_001999_120 Hb_007021_020 Hb_007021_020 Hb_000062_580--Hb_007021_020 Hb_003581_090 Hb_003581_090 Hb_000062_580--Hb_003581_090 Hb_000062_580--Hb_001722_040 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_000107_070 Hb_000107_070 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001741_090 Hb_001741_090 Hb_001035_040--Hb_001741_090 Hb_001035_040--Hb_003038_180 Hb_001035_040--Hb_148121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
280.252 13.4145 8.58229 32.1245 98.4383 50.5922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
456.878 325.35 230.517 26.287 13.9209

CAGE analysis