Hb_007120_090

Information

Type -
Description -
Location Contig7120: 97707-99243
Sequence    

Annotation

kegg
ID tcc:TCM_042984
description Ribosomal L29 family protein
nr
ID XP_012073343.1
description PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
swissprot
ID Q9M5L0
description 60S ribosomal protein L35 OS=Euphorbia esula GN=RPL35 PE=2 SV=1
trembl
ID A0A067LFS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06629 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l35-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55338: 97718-99208
cDNA
(Sanger)
(ID:Location)		 007_C05.ab1: 97720-99095 , 007_H02.ab1: 97720-99095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007120_090 0.0 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
2 Hb_000997_120 0.0417520046 - - 40S ribosomal protein S15E [Hevea brasiliensis]
3 Hb_001789_050 0.0638720996 - - 60S ribosomal protein L36-2 [Morus notabilis]
4 Hb_002838_030 0.0704418714 - - 40S ribosomal protein S25A [Hevea brasiliensis]
5 Hb_000948_220 0.0727615823 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
6 Hb_000676_160 0.0814046713 - - folate carrier protein, putative [Ricinus communis]
7 Hb_012395_130 0.0833861597 - - Os02g0814700 [Oryza sativa Japonica Group]
8 Hb_000203_020 0.0851829275 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
9 Hb_174865_010 0.0878037203 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
10 Hb_000915_120 0.0898749349 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
11 Hb_000735_040 0.0905787959 - - 60S ribosomal protein L32A [Hevea brasiliensis]
12 Hb_009476_020 0.090948987 - - tryptophan biosynthesis protein, putative [Ricinus communis]
13 Hb_002811_090 0.0915253768 - - 40S ribosomal protein S24A [Hevea brasiliensis]
14 Hb_000576_060 0.0933210447 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
15 Hb_003020_330 0.0941617833 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
16 Hb_007245_080 0.0947487046 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
17 Hb_179296_010 0.0965255759 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
18 Hb_001085_270 0.0976469146 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
19 Hb_172221_010 0.0984180998 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
20 Hb_086639_090 0.099141966 - - 60S ribosomal protein L7a, putative [Ricinus communis]

Gene co-expression network

sample Hb_007120_090 Hb_007120_090 Hb_000997_120 Hb_000997_120 Hb_007120_090--Hb_000997_120 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_002838_030 Hb_002838_030 Hb_007120_090--Hb_002838_030 Hb_000948_220 Hb_000948_220 Hb_007120_090--Hb_000948_220 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130 Hb_000997_120--Hb_002838_030 Hb_000997_120--Hb_012395_130 Hb_004543_040 Hb_004543_040 Hb_000997_120--Hb_004543_040 Hb_004125_110 Hb_004125_110 Hb_000997_120--Hb_004125_110 Hb_027684_020 Hb_027684_020 Hb_000997_120--Hb_027684_020 Hb_000576_060 Hb_000576_060 Hb_001789_050--Hb_000576_060 Hb_001789_050--Hb_000997_120 Hb_007245_080 Hb_007245_080 Hb_001789_050--Hb_007245_080 Hb_000212_210 Hb_000212_210 Hb_001789_050--Hb_000212_210 Hb_001789_050--Hb_000676_160 Hb_000915_120 Hb_000915_120 Hb_002838_030--Hb_000915_120 Hb_002838_030--Hb_000948_220 Hb_003020_330 Hb_003020_330 Hb_002838_030--Hb_003020_330 Hb_000087_130 Hb_000087_130 Hb_002838_030--Hb_000087_130 Hb_000948_220--Hb_000087_130 Hb_001155_040 Hb_001155_040 Hb_000948_220--Hb_001155_040 Hb_000317_070 Hb_000317_070 Hb_000948_220--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_000948_220--Hb_174865_010 Hb_000676_160--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000676_160--Hb_000735_040 Hb_002798_020 Hb_002798_020 Hb_000676_160--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_000676_160--Hb_007065_010 Hb_086639_090 Hb_086639_090 Hb_000676_160--Hb_086639_090 Hb_004754_070 Hb_004754_070 Hb_012395_130--Hb_004754_070 Hb_011377_020 Hb_011377_020 Hb_012395_130--Hb_011377_020 Hb_001780_050 Hb_001780_050 Hb_012395_130--Hb_001780_050 Hb_172221_010 Hb_172221_010 Hb_012395_130--Hb_172221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.3539 29.8817 74.6865 124.577 54.1666 85.811
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
200.142 490.334 99.9086 107.464 52.7685

CAGE analysis