Hb_007120_130

Information

Type -
Description -
Location Contig7120: 127345-135043
Sequence    

Annotation

kegg
ID rcu:RCOM_0469980
description hypothetical protein
nr
ID XP_002531618.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID B9T049
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_0469980 PE=3 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55340: 130139-132149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007120_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003759_040 0.0958038222 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
3 Hb_007576_130 0.1130989236 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
4 Hb_006789_030 0.1152181939 - - PREDICTED: wall-associated receptor kinase-like 22 [Prunus mume]
5 Hb_000020_020 0.1154022797 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
6 Hb_000185_170 0.1171630609 - - ATP binding protein, putative [Ricinus communis]
7 Hb_005486_020 0.1200124149 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
8 Hb_004611_050 0.1210504033 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
9 Hb_070136_010 0.1253403535 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
10 Hb_001266_130 0.1256450795 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
11 Hb_093364_010 0.127734707 - - PREDICTED: uncharacterized protein LOC105636199 [Jatropha curcas]
12 Hb_006615_220 0.1289317154 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
13 Hb_000265_170 0.1318402618 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
14 Hb_001352_030 0.1323925894 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
15 Hb_028487_040 0.1327749707 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
16 Hb_003777_120 0.1338282003 - - -
17 Hb_029095_010 0.1355142525 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
18 Hb_000990_040 0.1369059238 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
19 Hb_004117_280 0.1370831831 - - hypothetical protein JCGZ_00361 [Jatropha curcas]
20 Hb_005834_050 0.1374707393 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007120_130 Hb_007120_130 Hb_003759_040 Hb_003759_040 Hb_007120_130--Hb_003759_040 Hb_007576_130 Hb_007576_130 Hb_007120_130--Hb_007576_130 Hb_006789_030 Hb_006789_030 Hb_007120_130--Hb_006789_030 Hb_000020_020 Hb_000020_020 Hb_007120_130--Hb_000020_020 Hb_000185_170 Hb_000185_170 Hb_007120_130--Hb_000185_170 Hb_005486_020 Hb_005486_020 Hb_007120_130--Hb_005486_020 Hb_001776_130 Hb_001776_130 Hb_003759_040--Hb_001776_130 Hb_005834_050 Hb_005834_050 Hb_003759_040--Hb_005834_050 Hb_028487_040 Hb_028487_040 Hb_003759_040--Hb_028487_040 Hb_002995_010 Hb_002995_010 Hb_003759_040--Hb_002995_010 Hb_000914_140 Hb_000914_140 Hb_003759_040--Hb_000914_140 Hb_000538_250 Hb_000538_250 Hb_007576_130--Hb_000538_250 Hb_001638_190 Hb_001638_190 Hb_007576_130--Hb_001638_190 Hb_001898_100 Hb_001898_100 Hb_007576_130--Hb_001898_100 Hb_001352_030 Hb_001352_030 Hb_007576_130--Hb_001352_030 Hb_003337_020 Hb_003337_020 Hb_007576_130--Hb_003337_020 Hb_031685_010 Hb_031685_010 Hb_006789_030--Hb_031685_010 Hb_010407_150 Hb_010407_150 Hb_006789_030--Hb_010407_150 Hb_029095_010 Hb_029095_010 Hb_006789_030--Hb_029095_010 Hb_001544_060 Hb_001544_060 Hb_006789_030--Hb_001544_060 Hb_034585_070 Hb_034585_070 Hb_006789_030--Hb_034585_070 Hb_006789_030--Hb_001898_100 Hb_093364_010 Hb_093364_010 Hb_000020_020--Hb_093364_010 Hb_001918_030 Hb_001918_030 Hb_000020_020--Hb_001918_030 Hb_004611_050 Hb_004611_050 Hb_000020_020--Hb_004611_050 Hb_000020_020--Hb_029095_010 Hb_001266_130 Hb_001266_130 Hb_000020_020--Hb_001266_130 Hb_000046_430 Hb_000046_430 Hb_000020_020--Hb_000046_430 Hb_070136_010 Hb_070136_010 Hb_000185_170--Hb_070136_010 Hb_000037_200 Hb_000037_200 Hb_000185_170--Hb_000037_200 Hb_002078_320 Hb_002078_320 Hb_000185_170--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_000185_170--Hb_000987_020 Hb_001629_120 Hb_001629_120 Hb_000185_170--Hb_001629_120 Hb_000265_170 Hb_000265_170 Hb_000185_170--Hb_000265_170 Hb_000990_040 Hb_000990_040 Hb_005486_020--Hb_000990_040 Hb_005486_020--Hb_029095_010 Hb_005486_020--Hb_001352_030 Hb_002596_090 Hb_002596_090 Hb_005486_020--Hb_002596_090 Hb_005486_020--Hb_093364_010 Hb_111997_010 Hb_111997_010 Hb_005486_020--Hb_111997_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.10817 4.09555 1.34667 0 0.00832785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0199073 0.0783214 0 0.88404 1.72683

CAGE analysis