Hb_007122_010

Information

Type -
Description -
Location Contig7122: 21710-32796
Sequence    

Annotation

kegg
ID rcu:RCOM_0905040
description multidrug resistance pump, putative
nr
ID KDP20756.1
description hypothetical protein JCGZ_21227 [Jatropha curcas]
swissprot
ID Q9SIA5
description MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1
trembl
ID A0A067JAE2
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_21227 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55342: 21642-25261
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007122_010 0.0 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
2 Hb_000282_100 0.0813253826 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
3 Hb_001951_040 0.0817575491 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
4 Hb_004712_230 0.0883841799 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
5 Hb_001289_050 0.0934887182 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
6 Hb_000029_390 0.0944234719 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
7 Hb_004631_020 0.0944749791 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
8 Hb_004855_030 0.0968119865 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
9 Hb_004920_080 0.0981240621 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
10 Hb_002027_420 0.1009116759 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
11 Hb_005736_030 0.1018256095 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
12 Hb_000349_150 0.1022866257 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
13 Hb_020805_090 0.1035748203 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
14 Hb_011689_070 0.106295338 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
15 Hb_000858_050 0.1078859041 - - kinase, putative [Ricinus communis]
16 Hb_001001_130 0.1091710907 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
17 Hb_001135_190 0.1111281842 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
18 Hb_009093_020 0.1114246691 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
19 Hb_004807_040 0.1121810382 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
20 Hb_001517_060 0.1122479131 - - phosphoribulose kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007122_010 Hb_007122_010 Hb_000282_100 Hb_000282_100 Hb_007122_010--Hb_000282_100 Hb_001951_040 Hb_001951_040 Hb_007122_010--Hb_001951_040 Hb_004712_230 Hb_004712_230 Hb_007122_010--Hb_004712_230 Hb_001289_050 Hb_001289_050 Hb_007122_010--Hb_001289_050 Hb_000029_390 Hb_000029_390 Hb_007122_010--Hb_000029_390 Hb_004631_020 Hb_004631_020 Hb_007122_010--Hb_004631_020 Hb_000282_100--Hb_001289_050 Hb_009093_020 Hb_009093_020 Hb_000282_100--Hb_009093_020 Hb_000282_100--Hb_000029_390 Hb_000841_040 Hb_000841_040 Hb_000282_100--Hb_000841_040 Hb_000282_100--Hb_004631_020 Hb_001832_180 Hb_001832_180 Hb_000282_100--Hb_001832_180 Hb_005736_030 Hb_005736_030 Hb_001951_040--Hb_005736_030 Hb_001135_190 Hb_001135_190 Hb_001951_040--Hb_001135_190 Hb_020805_090 Hb_020805_090 Hb_001951_040--Hb_020805_090 Hb_001951_040--Hb_004631_020 Hb_004855_030 Hb_004855_030 Hb_001951_040--Hb_004855_030 Hb_004712_230--Hb_004631_020 Hb_004712_230--Hb_005736_030 Hb_011381_120 Hb_011381_120 Hb_004712_230--Hb_011381_120 Hb_002995_060 Hb_002995_060 Hb_004712_230--Hb_002995_060 Hb_002818_130 Hb_002818_130 Hb_004712_230--Hb_002818_130 Hb_003653_030 Hb_003653_030 Hb_004712_230--Hb_003653_030 Hb_004807_040 Hb_004807_040 Hb_001289_050--Hb_004807_040 Hb_001289_050--Hb_009093_020 Hb_001289_050--Hb_000841_040 Hb_001289_050--Hb_011381_120 Hb_001579_050 Hb_001579_050 Hb_001289_050--Hb_001579_050 Hb_004920_080 Hb_004920_080 Hb_000029_390--Hb_004920_080 Hb_000029_390--Hb_002995_060 Hb_000029_390--Hb_009093_020 Hb_001517_060 Hb_001517_060 Hb_000029_390--Hb_001517_060 Hb_000029_390--Hb_004631_020 Hb_004631_020--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_004631_020--Hb_003090_050 Hb_001135_170 Hb_001135_170 Hb_004631_020--Hb_001135_170 Hb_004631_020--Hb_005736_030 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0814117 0.769732 0.358891 0.0119241 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0540193 0 0 0.0674163 4.85816

CAGE analysis