Hb_007122_030

Information

Type -
Description -
Location Contig7122: 81068-86231
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007122_030 0.0 - - -
2 Hb_004208_110 0.0001175959 - - -
3 Hb_086639_060 0.002181183 - - hypothetical protein JCGZ_25622 [Jatropha curcas]
4 Hb_136367_010 0.0087309288 - - hypothetical protein POPTR_0012s02040g [Populus trichocarpa]
5 Hb_000232_050 0.0172768326 - - -
6 Hb_000513_010 0.0232276532 - - -
7 Hb_032107_010 0.0262062502 - - PREDICTED: uncharacterized protein LOC104225171 [Nicotiana sylvestris]
8 Hb_032252_040 0.0266566146 - - -
9 Hb_011457_010 0.0306239891 - - nucleolar protein nop56, putative [Ricinus communis]
10 Hb_110798_010 0.031992604 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
11 Hb_175651_010 0.0320706284 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_004800_040 0.0331463544 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
13 Hb_001147_100 0.0338847065 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_007287_020 0.0341991188 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_009563_020 0.0344333827 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000425_050 0.0345568187 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
17 Hb_019093_010 0.1017465659 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_000069_680 0.1045101522 - - -
19 Hb_006775_010 0.1171298257 transcription factor TF Family: M-type AGAMOUS [Populus yunnanensis]
20 Hb_000212_220 0.1207307442 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007122_030 Hb_007122_030 Hb_004208_110 Hb_004208_110 Hb_007122_030--Hb_004208_110 Hb_086639_060 Hb_086639_060 Hb_007122_030--Hb_086639_060 Hb_136367_010 Hb_136367_010 Hb_007122_030--Hb_136367_010 Hb_000232_050 Hb_000232_050 Hb_007122_030--Hb_000232_050 Hb_000513_010 Hb_000513_010 Hb_007122_030--Hb_000513_010 Hb_032107_010 Hb_032107_010 Hb_007122_030--Hb_032107_010 Hb_004208_110--Hb_086639_060 Hb_004208_110--Hb_136367_010 Hb_004208_110--Hb_000232_050 Hb_004208_110--Hb_000513_010 Hb_004208_110--Hb_032107_010 Hb_086639_060--Hb_136367_010 Hb_086639_060--Hb_000232_050 Hb_086639_060--Hb_000513_010 Hb_086639_060--Hb_032107_010 Hb_136367_010--Hb_000232_050 Hb_136367_010--Hb_000513_010 Hb_136367_010--Hb_032107_010 Hb_000232_050--Hb_000513_010 Hb_000232_050--Hb_032107_010 Hb_032252_040 Hb_032252_040 Hb_000232_050--Hb_032252_040 Hb_011457_010 Hb_011457_010 Hb_000232_050--Hb_011457_010 Hb_110798_010 Hb_110798_010 Hb_000232_050--Hb_110798_010 Hb_000513_010--Hb_032107_010 Hb_000513_010--Hb_032252_040 Hb_000513_010--Hb_011457_010 Hb_000513_010--Hb_110798_010 Hb_175651_010 Hb_175651_010 Hb_000513_010--Hb_175651_010 Hb_032107_010--Hb_032252_040 Hb_032107_010--Hb_011457_010 Hb_032107_010--Hb_110798_010 Hb_032107_010--Hb_175651_010 Hb_004800_040 Hb_004800_040 Hb_032107_010--Hb_004800_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.829842 0 0 0.311623 0

CAGE analysis