Hb_007123_030

Information

Type -
Description -
Location Contig7123: 81901-96849
Sequence    

Annotation

kegg
ID rcu:RCOM_0843050
description hypothetical protein
nr
ID XP_012072217.1
description PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
swissprot
ID Q55681
description ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=recG PE=3 SV=1
trembl
ID A0A067KPA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04694 PE=4 SV=1
Gene Ontology
ID GO:0003676
description atp-dependent dna helicase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55355: 81911-90598 , PASA_asmbl_55357: 90736-111853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007123_030 0.0 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
2 Hb_001946_340 0.0675269392 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
3 Hb_001343_040 0.0677695347 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
4 Hb_001377_160 0.0680487848 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
5 Hb_000130_410 0.0751455369 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]
6 Hb_003498_120 0.07868632 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
7 Hb_001235_140 0.079100447 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
8 Hb_000579_230 0.0795570711 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
9 Hb_011537_050 0.0798405991 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
10 Hb_003943_010 0.0802527762 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000170_150 0.0803237354 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
12 Hb_007657_020 0.0811302275 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
13 Hb_002815_030 0.081302482 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
14 Hb_000398_080 0.0815125636 - - tip120, putative [Ricinus communis]
15 Hb_003371_110 0.0828141319 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
16 Hb_183612_040 0.0834409392 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
17 Hb_003734_010 0.0836153405 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
18 Hb_000190_120 0.0838248384 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
19 Hb_002681_090 0.0843506383 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
20 Hb_001860_030 0.0847335759 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_007123_030 Hb_007123_030 Hb_001946_340 Hb_001946_340 Hb_007123_030--Hb_001946_340 Hb_001343_040 Hb_001343_040 Hb_007123_030--Hb_001343_040 Hb_001377_160 Hb_001377_160 Hb_007123_030--Hb_001377_160 Hb_000130_410 Hb_000130_410 Hb_007123_030--Hb_000130_410 Hb_003498_120 Hb_003498_120 Hb_007123_030--Hb_003498_120 Hb_001235_140 Hb_001235_140 Hb_007123_030--Hb_001235_140 Hb_003943_010 Hb_003943_010 Hb_001946_340--Hb_003943_010 Hb_007747_040 Hb_007747_040 Hb_001946_340--Hb_007747_040 Hb_004935_030 Hb_004935_030 Hb_001946_340--Hb_004935_030 Hb_001767_140 Hb_001767_140 Hb_001946_340--Hb_001767_140 Hb_001946_340--Hb_001377_160 Hb_002815_030 Hb_002815_030 Hb_001343_040--Hb_002815_030 Hb_000613_050 Hb_000613_050 Hb_001343_040--Hb_000613_050 Hb_000592_030 Hb_000592_030 Hb_001343_040--Hb_000592_030 Hb_000395_070 Hb_000395_070 Hb_001343_040--Hb_000395_070 Hb_001814_030 Hb_001814_030 Hb_001343_040--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_001343_040--Hb_012395_140 Hb_001377_160--Hb_003943_010 Hb_004668_060 Hb_004668_060 Hb_001377_160--Hb_004668_060 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_000398_080 Hb_000398_080 Hb_001377_160--Hb_000398_080 Hb_001377_160--Hb_003498_120 Hb_000139_130 Hb_000139_130 Hb_001377_160--Hb_000139_130 Hb_000318_250 Hb_000318_250 Hb_000130_410--Hb_000318_250 Hb_002026_210 Hb_002026_210 Hb_000130_410--Hb_002026_210 Hb_001396_200 Hb_001396_200 Hb_000130_410--Hb_001396_200 Hb_000708_030 Hb_000708_030 Hb_000130_410--Hb_000708_030 Hb_004324_130 Hb_004324_130 Hb_000130_410--Hb_004324_130 Hb_001546_080 Hb_001546_080 Hb_000130_410--Hb_001546_080 Hb_003177_060 Hb_003177_060 Hb_003498_120--Hb_003177_060 Hb_000505_020 Hb_000505_020 Hb_003498_120--Hb_000505_020 Hb_003498_120--Hb_001235_140 Hb_001821_090 Hb_001821_090 Hb_003498_120--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_003498_120--Hb_005143_030 Hb_010053_030 Hb_010053_030 Hb_001235_140--Hb_010053_030 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_001235_140--Hb_000505_020 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4343 16.021 9.91628 10.7599 13.6735 17.7168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6381 8.42549 7.21834 16.4875 11.7551

CAGE analysis