Hb_007123_050

Information

Type -
Description -
Location Contig7123: 111786-122602
Sequence    

Annotation

kegg
ID rcu:RCOM_0843160
description Vitellogenic carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_002526021.1
description Vitellogenic carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q9M9Q6
description Serine carboxypeptidase-like 50 OS=Arabidopsis thaliana GN=SCPL50 PE=2 SV=1
trembl
ID B9SJ52
description Carboxypeptidase OS=Ricinus communis GN=RCOM_0843160 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55357: 90736-111853 , PASA_asmbl_55359: 111870-117331 , PASA_asmbl_55360: 117353-119657 , PASA_asmbl_55361: 117742-119668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007123_050 0.0 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
2 Hb_158092_080 0.0643715367 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
3 Hb_004064_050 0.085116391 - - Structural maintenance of chromosome, putative [Ricinus communis]
4 Hb_000243_130 0.0919575534 - - hypothetical protein M569_10795, partial [Genlisea aurea]
5 Hb_000608_230 0.093797717 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
6 Hb_044486_040 0.0958156401 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
7 Hb_003913_110 0.0962028134 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
8 Hb_000035_010 0.0964551508 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
9 Hb_002475_040 0.0966084658 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
10 Hb_007576_210 0.0978805052 - - PREDICTED: protein furry homolog [Jatropha curcas]
11 Hb_000284_230 0.0983622199 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
12 Hb_001953_120 0.0990635086 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
13 Hb_001221_180 0.1022595684 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_001381_050 0.1025054631 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
15 Hb_000826_070 0.1032652456 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000172_340 0.1032805832 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
17 Hb_000011_270 0.1044380988 - - PREDICTED: pumilio homolog 23 [Jatropha curcas]
18 Hb_007120_060 0.1046579169 - - PREDICTED: splicing factor 3B subunit 3-like [Jatropha curcas]
19 Hb_004223_160 0.1049720731 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
20 Hb_007245_020 0.1050224341 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_007123_050 Hb_007123_050 Hb_158092_080 Hb_158092_080 Hb_007123_050--Hb_158092_080 Hb_004064_050 Hb_004064_050 Hb_007123_050--Hb_004064_050 Hb_000243_130 Hb_000243_130 Hb_007123_050--Hb_000243_130 Hb_000608_230 Hb_000608_230 Hb_007123_050--Hb_000608_230 Hb_044486_040 Hb_044486_040 Hb_007123_050--Hb_044486_040 Hb_003913_110 Hb_003913_110 Hb_007123_050--Hb_003913_110 Hb_002475_040 Hb_002475_040 Hb_158092_080--Hb_002475_040 Hb_158092_080--Hb_004064_050 Hb_000284_230 Hb_000284_230 Hb_158092_080--Hb_000284_230 Hb_007894_160 Hb_007894_160 Hb_158092_080--Hb_007894_160 Hb_000608_300 Hb_000608_300 Hb_158092_080--Hb_000608_300 Hb_004064_050--Hb_002475_040 Hb_004064_050--Hb_000243_130 Hb_005402_040 Hb_005402_040 Hb_004064_050--Hb_005402_040 Hb_003124_160 Hb_003124_160 Hb_004064_050--Hb_003124_160 Hb_000377_050 Hb_000377_050 Hb_004064_050--Hb_000377_050 Hb_000243_130--Hb_044486_040 Hb_000243_130--Hb_007894_160 Hb_033554_020 Hb_033554_020 Hb_000243_130--Hb_033554_020 Hb_000243_130--Hb_002475_040 Hb_009486_080 Hb_009486_080 Hb_000243_130--Hb_009486_080 Hb_000608_230--Hb_005402_040 Hb_140049_080 Hb_140049_080 Hb_000608_230--Hb_140049_080 Hb_178968_050 Hb_178968_050 Hb_000608_230--Hb_178968_050 Hb_000331_580 Hb_000331_580 Hb_000608_230--Hb_000331_580 Hb_003216_090 Hb_003216_090 Hb_000608_230--Hb_003216_090 Hb_000823_030 Hb_000823_030 Hb_000608_230--Hb_000823_030 Hb_001646_010 Hb_001646_010 Hb_044486_040--Hb_001646_010 Hb_001221_090 Hb_001221_090 Hb_044486_040--Hb_001221_090 Hb_001904_030 Hb_001904_030 Hb_044486_040--Hb_001904_030 Hb_011202_030 Hb_011202_030 Hb_044486_040--Hb_011202_030 Hb_001341_160 Hb_001341_160 Hb_044486_040--Hb_001341_160 Hb_001452_220 Hb_001452_220 Hb_003913_110--Hb_001452_220 Hb_003913_110--Hb_000608_230 Hb_011173_030 Hb_011173_030 Hb_003913_110--Hb_011173_030 Hb_000307_210 Hb_000307_210 Hb_003913_110--Hb_000307_210 Hb_000740_100 Hb_000740_100 Hb_003913_110--Hb_000740_100 Hb_028487_010 Hb_028487_010 Hb_003913_110--Hb_028487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.75646 12.555 8.31575 9.29268 11.1843 8.295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.43641 1.96665 3.35827 16.7777 14.7453

CAGE analysis