Hb_007124_010

Information

Type -
Description -
Location Contig7124: 16015-16599
Sequence    

Annotation

kegg
ID rcu:RCOM_0653410
description developmentally regulated GTP-binding protein, putative
nr
ID CDP21901.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9CAI1
description Developmentally-regulated G-protein 2 OS=Arabidopsis thaliana GN=DRG2 PE=2 SV=1
trembl
ID A0A068VMH1
description Coffea canephora DH200=94 genomic scaffold, scaffold_7602 OS=Coffea canephora GN=GSCOC_T00000740001 PE=4 SV=1
Gene Ontology
ID GO:0005525
description developmentally-regulated g-protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007124_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_002783_060 0.1514256603 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
3 Hb_005731_140 0.1743043647 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
4 Hb_005305_060 0.1781328242 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
5 Hb_028639_050 0.1796828366 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
6 Hb_000329_770 0.1811587225 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006846_140 0.182814306 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005965_010 0.1934706853 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
9 Hb_002960_050 0.1936996683 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
10 Hb_032531_060 0.2001089755 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
11 Hb_002849_040 0.2001862582 - - caax prenyl protease ste24, putative [Ricinus communis]
12 Hb_001722_020 0.2005626141 - - -
13 Hb_106005_010 0.2052847832 - - EG5651 [Manihot esculenta]
14 Hb_073559_010 0.2109054857 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
15 Hb_000810_020 0.2121449789 - - -
16 Hb_006455_110 0.2121788632 - - bromodomain-containing protein, putative [Ricinus communis]
17 Hb_004137_080 0.2128583015 - - conserved hypothetical protein [Ricinus communis]
18 Hb_088774_010 0.2151240004 - - -
19 Hb_000161_120 0.2154898648 - - unnamed protein product [Vitis vinifera]
20 Hb_006252_010 0.2181990725 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007124_010 Hb_007124_010 Hb_002783_060 Hb_002783_060 Hb_007124_010--Hb_002783_060 Hb_005731_140 Hb_005731_140 Hb_007124_010--Hb_005731_140 Hb_005305_060 Hb_005305_060 Hb_007124_010--Hb_005305_060 Hb_028639_050 Hb_028639_050 Hb_007124_010--Hb_028639_050 Hb_000329_770 Hb_000329_770 Hb_007124_010--Hb_000329_770 Hb_006846_140 Hb_006846_140 Hb_007124_010--Hb_006846_140 Hb_000810_020 Hb_000810_020 Hb_002783_060--Hb_000810_020 Hb_002960_050 Hb_002960_050 Hb_002783_060--Hb_002960_050 Hb_002783_060--Hb_006846_140 Hb_005085_030 Hb_005085_030 Hb_002783_060--Hb_005085_030 Hb_002783_060--Hb_005731_140 Hb_032531_060 Hb_032531_060 Hb_005731_140--Hb_032531_060 Hb_002482_060 Hb_002482_060 Hb_005731_140--Hb_002482_060 Hb_106005_010 Hb_106005_010 Hb_005731_140--Hb_106005_010 Hb_124141_010 Hb_124141_010 Hb_005731_140--Hb_124141_010 Hb_034579_010 Hb_034579_010 Hb_005731_140--Hb_034579_010 Hb_005731_140--Hb_000810_020 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_005305_060--Hb_000329_770 Hb_027445_060 Hb_027445_060 Hb_005305_060--Hb_027445_060 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_115919_010 Hb_115919_010 Hb_005305_060--Hb_115919_010 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_028639_050--Hb_000329_770 Hb_000453_260 Hb_000453_260 Hb_028639_050--Hb_000453_260 Hb_004502_050 Hb_004502_050 Hb_028639_050--Hb_004502_050 Hb_028639_050--Hb_005305_060 Hb_002197_030 Hb_002197_030 Hb_028639_050--Hb_002197_030 Hb_013405_130 Hb_013405_130 Hb_028639_050--Hb_013405_130 Hb_015057_010 Hb_015057_010 Hb_000329_770--Hb_015057_010 Hb_011016_090 Hb_011016_090 Hb_000329_770--Hb_011016_090 Hb_006502_080 Hb_006502_080 Hb_000329_770--Hb_006502_080 Hb_002259_150 Hb_002259_150 Hb_000329_770--Hb_002259_150 Hb_000380_010 Hb_000380_010 Hb_000329_770--Hb_000380_010 Hb_006846_140--Hb_000810_020 Hb_056199_010 Hb_056199_010 Hb_006846_140--Hb_056199_010 Hb_006846_140--Hb_005085_030 Hb_006846_140--Hb_002960_050 Hb_169170_010 Hb_169170_010 Hb_006846_140--Hb_169170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.13385 0.274782 0.453439 1.86321 4.30314 24.9245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.33757 3.72961 2.6776 0.952469 3.23073

CAGE analysis