Hb_007125_020

Information

Type -
Description -
Location Contig7125: 20368-22828
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18010g
description POPTRDRAFT_757998; hypothetical protein
nr
ID XP_002303849.2
description hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GVK3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s18010g PE=4 SV=2
Gene Ontology
ID GO:0005886
description upf0481 protein at3g47200-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007125_020 0.0 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
2 Hb_009838_030 0.0875835707 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
3 Hb_001948_100 0.0879612331 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002014_120 0.0921865827 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
5 Hb_000352_020 0.0944306069 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
6 Hb_004652_040 0.0952909578 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_003337_010 0.0966567776 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008196_010 0.0977913742 - - unnamed protein product [Coffea canephora]
9 Hb_103000_010 0.1002414825 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
10 Hb_000152_090 0.1006826711 - - unnamed protein product [Coffea canephora]
11 Hb_003073_060 0.1017630149 - - -
12 Hb_179367_010 0.1018499926 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
13 Hb_005428_010 0.1099298193 - - cytochrome P450, putative [Ricinus communis]
14 Hb_104362_020 0.1130643268 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_000174_130 0.1183454791 - - flowering locus T-like protein [Fagus crenata]
16 Hb_166700_010 0.1288364111 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_151027_010 0.1291125367 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
18 Hb_003442_020 0.1312969907 - - ccd1, putative [Ricinus communis]
19 Hb_010261_050 0.1323764238 - - DNA binding protein, putative [Ricinus communis]
20 Hb_006615_110 0.1390051971 transcription factor TF Family: bZIP hypothetical protein JCGZ_11777 [Jatropha curcas]

Gene co-expression network

sample Hb_007125_020 Hb_007125_020 Hb_009838_030 Hb_009838_030 Hb_007125_020--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_007125_020--Hb_001948_100 Hb_002014_120 Hb_002014_120 Hb_007125_020--Hb_002014_120 Hb_000352_020 Hb_000352_020 Hb_007125_020--Hb_000352_020 Hb_004652_040 Hb_004652_040 Hb_007125_020--Hb_004652_040 Hb_003337_010 Hb_003337_010 Hb_007125_020--Hb_003337_010 Hb_009838_030--Hb_000352_020 Hb_009838_030--Hb_002014_120 Hb_009838_030--Hb_001948_100 Hb_009838_030--Hb_004652_040 Hb_179367_010 Hb_179367_010 Hb_009838_030--Hb_179367_010 Hb_009838_030--Hb_003337_010 Hb_000152_090 Hb_000152_090 Hb_001948_100--Hb_000152_090 Hb_001948_100--Hb_003337_010 Hb_001948_100--Hb_002014_120 Hb_001948_100--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_001948_100--Hb_103000_010 Hb_002014_120--Hb_004652_040 Hb_002014_120--Hb_103000_010 Hb_002014_120--Hb_179367_010 Hb_002014_120--Hb_003337_010 Hb_000352_020--Hb_002014_120 Hb_005428_010 Hb_005428_010 Hb_000352_020--Hb_005428_010 Hb_003073_060 Hb_003073_060 Hb_000352_020--Hb_003073_060 Hb_000352_020--Hb_179367_010 Hb_000352_020--Hb_001948_100 Hb_004652_040--Hb_103000_010 Hb_004652_040--Hb_003337_010 Hb_004652_040--Hb_179367_010 Hb_000174_130 Hb_000174_130 Hb_004652_040--Hb_000174_130 Hb_003337_010--Hb_103000_010 Hb_003337_010--Hb_179367_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.323639 0.212319 1.05719 0.023851 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis