Hb_007125_040

Information

Type -
Description -
Location Contig7125: 51499-58360
Sequence    

Annotation

kegg
ID pop:POPTR_0012s14160g
description POPTRDRAFT_806659; cationic amino acid transporter 1 family protein
nr
ID XP_012075649.1
description PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
swissprot
ID Q84MA5
description Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1
trembl
ID A0A067KIW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09246 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cationic amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55377: 52659-52850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007125_040 0.0 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
2 Hb_002631_040 0.1542544391 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
3 Hb_001104_110 0.1593513049 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
4 Hb_000866_090 0.1610945346 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
5 Hb_001946_150 0.1666479002 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010407_170 0.1683048951 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
7 Hb_001638_090 0.1690056243 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
8 Hb_002301_170 0.1693477633 - - MAC/Perforin domain-containing protein [Theobroma cacao]
9 Hb_001268_120 0.1697906079 - - conserved hypothetical protein [Ricinus communis]
10 Hb_011930_070 0.1721589576 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
11 Hb_000622_280 0.1741506352 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
12 Hb_009732_020 0.1744334866 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
13 Hb_000905_170 0.1764357512 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
14 Hb_006717_070 0.176908884 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
15 Hb_003849_240 0.1782629482 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_001080_140 0.1792792992 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
17 Hb_049436_010 0.179701807 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
18 Hb_001799_190 0.181112482 - - PREDICTED: uncharacterized protein LOC105643221 [Jatropha curcas]
19 Hb_001699_150 0.1826618798 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
20 Hb_000631_120 0.1856071656 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_007125_040 Hb_007125_040 Hb_002631_040 Hb_002631_040 Hb_007125_040--Hb_002631_040 Hb_001104_110 Hb_001104_110 Hb_007125_040--Hb_001104_110 Hb_000866_090 Hb_000866_090 Hb_007125_040--Hb_000866_090 Hb_001946_150 Hb_001946_150 Hb_007125_040--Hb_001946_150 Hb_010407_170 Hb_010407_170 Hb_007125_040--Hb_010407_170 Hb_001638_090 Hb_001638_090 Hb_007125_040--Hb_001638_090 Hb_001080_140 Hb_001080_140 Hb_002631_040--Hb_001080_140 Hb_002631_040--Hb_000866_090 Hb_002301_170 Hb_002301_170 Hb_002631_040--Hb_002301_170 Hb_001396_010 Hb_001396_010 Hb_002631_040--Hb_001396_010 Hb_007765_030 Hb_007765_030 Hb_002631_040--Hb_007765_030 Hb_002631_040--Hb_001104_110 Hb_002641_030 Hb_002641_030 Hb_001104_110--Hb_002641_030 Hb_004934_050 Hb_004934_050 Hb_001104_110--Hb_004934_050 Hb_016734_060 Hb_016734_060 Hb_001104_110--Hb_016734_060 Hb_000631_120 Hb_000631_120 Hb_001104_110--Hb_000631_120 Hb_049436_010 Hb_049436_010 Hb_001104_110--Hb_049436_010 Hb_001031_090 Hb_001031_090 Hb_001104_110--Hb_001031_090 Hb_000645_240 Hb_000645_240 Hb_000866_090--Hb_000645_240 Hb_000866_090--Hb_001080_140 Hb_002471_140 Hb_002471_140 Hb_000866_090--Hb_002471_140 Hb_008667_060 Hb_008667_060 Hb_000866_090--Hb_008667_060 Hb_000802_190 Hb_000802_190 Hb_000866_090--Hb_000802_190 Hb_001699_150 Hb_001699_150 Hb_000866_090--Hb_001699_150 Hb_002903_130 Hb_002903_130 Hb_001946_150--Hb_002903_130 Hb_000362_110 Hb_000362_110 Hb_001946_150--Hb_000362_110 Hb_000313_370 Hb_000313_370 Hb_001946_150--Hb_000313_370 Hb_001946_150--Hb_000866_090 Hb_001946_150--Hb_000645_240 Hb_001799_190 Hb_001799_190 Hb_001946_150--Hb_001799_190 Hb_010407_170--Hb_001104_110 Hb_001268_120 Hb_001268_120 Hb_010407_170--Hb_001268_120 Hb_000905_170 Hb_000905_170 Hb_010407_170--Hb_000905_170 Hb_000009_330 Hb_000009_330 Hb_010407_170--Hb_000009_330 Hb_006538_080 Hb_006538_080 Hb_010407_170--Hb_006538_080 Hb_010407_170--Hb_002631_040 Hb_000648_080 Hb_000648_080 Hb_001638_090--Hb_000648_080 Hb_001638_090--Hb_001104_110 Hb_001638_090--Hb_016734_060 Hb_000768_180 Hb_000768_180 Hb_001638_090--Hb_000768_180 Hb_004916_020 Hb_004916_020 Hb_001638_090--Hb_004916_020 Hb_002890_120 Hb_002890_120 Hb_001638_090--Hb_002890_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250601 0.794969 0.38276 0.123112 0.16379 0.247752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.13287 0.339721 0.0979872 1.00214 0.163632

CAGE analysis