Hb_007136_010

Information

Type desease resistance
Description Gene Name: UBA
Location Contig7136: 12417-16356
Sequence    

Annotation

kegg
ID pop:POPTR_0011s00660g
description POPTRDRAFT_889921; hypothetical protein
nr
ID XP_012091241.1
description PREDICTED: ATPase WRNIP1 [Jatropha curcas]
swissprot
ID Q8CG07
description ATPase WRNIP1 OS=Rattus norvegicus GN=Wrnip1 PE=2 SV=1
trembl
ID A0A067JA75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21142 PE=4 SV=1
Gene Ontology
ID GO:0003677
description atpase wrnip1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55390: 12563-12792
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007136_010 0.0 desease resistance Gene Name: UBA PREDICTED: ATPase WRNIP1 [Jatropha curcas]
2 Hb_003305_030 0.1634751451 - - -
3 Hb_018691_020 0.1795591084 - - -
4 Hb_002122_030 0.18714313 - - -
5 Hb_041895_040 0.1950589541 - - conserved hypothetical protein [Ricinus communis]
6 Hb_053519_010 0.1972504617 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
7 Hb_001769_110 0.1973078957 - - PREDICTED: probable metal-nicotianamine transporter YSL7 [Jatropha curcas]
8 Hb_005000_250 0.1988913607 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
9 Hb_001246_160 0.2025954844 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
10 Hb_178793_010 0.2027057788 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
11 Hb_000340_560 0.2028500437 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000594_110 0.2042798233 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
13 Hb_002518_200 0.2065654674 - - Proliferating cell nuclear antigen [Theobroma cacao]
14 Hb_000077_440 0.2105381346 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
15 Hb_005488_120 0.2130737721 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
16 Hb_000000_340 0.2131991471 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like isoform X1 [Jatropha curcas]
17 Hb_028487_130 0.2137292704 - - kinase family protein [Populus trichocarpa]
18 Hb_001518_060 0.2146451407 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
19 Hb_001255_010 0.2150057918 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
20 Hb_002250_050 0.2168864101 - - PREDICTED: uncharacterized protein LOC105638972 [Jatropha curcas]

Gene co-expression network

sample Hb_007136_010 Hb_007136_010 Hb_003305_030 Hb_003305_030 Hb_007136_010--Hb_003305_030 Hb_018691_020 Hb_018691_020 Hb_007136_010--Hb_018691_020 Hb_002122_030 Hb_002122_030 Hb_007136_010--Hb_002122_030 Hb_041895_040 Hb_041895_040 Hb_007136_010--Hb_041895_040 Hb_053519_010 Hb_053519_010 Hb_007136_010--Hb_053519_010 Hb_001769_110 Hb_001769_110 Hb_007136_010--Hb_001769_110 Hb_002250_050 Hb_002250_050 Hb_003305_030--Hb_002250_050 Hb_003305_030--Hb_041895_040 Hb_000692_210 Hb_000692_210 Hb_003305_030--Hb_000692_210 Hb_000438_090 Hb_000438_090 Hb_003305_030--Hb_000438_090 Hb_171718_020 Hb_171718_020 Hb_003305_030--Hb_171718_020 Hb_164945_010 Hb_164945_010 Hb_003305_030--Hb_164945_010 Hb_028487_130 Hb_028487_130 Hb_018691_020--Hb_028487_130 Hb_178793_010 Hb_178793_010 Hb_018691_020--Hb_178793_010 Hb_001255_010 Hb_001255_010 Hb_018691_020--Hb_001255_010 Hb_018691_020--Hb_053519_010 Hb_001518_060 Hb_001518_060 Hb_018691_020--Hb_001518_060 Hb_001246_160 Hb_001246_160 Hb_002122_030--Hb_001246_160 Hb_000009_200 Hb_000009_200 Hb_002122_030--Hb_000009_200 Hb_000805_040 Hb_000805_040 Hb_002122_030--Hb_000805_040 Hb_005714_100 Hb_005714_100 Hb_002122_030--Hb_005714_100 Hb_011689_100 Hb_011689_100 Hb_002122_030--Hb_011689_100 Hb_004712_160 Hb_004712_160 Hb_002122_030--Hb_004712_160 Hb_005394_010 Hb_005394_010 Hb_041895_040--Hb_005394_010 Hb_015026_040 Hb_015026_040 Hb_041895_040--Hb_015026_040 Hb_041895_040--Hb_001246_160 Hb_000163_230 Hb_000163_230 Hb_041895_040--Hb_000163_230 Hb_041895_040--Hb_001769_110 Hb_000594_110 Hb_000594_110 Hb_041895_040--Hb_000594_110 Hb_020967_010 Hb_020967_010 Hb_053519_010--Hb_020967_010 Hb_056196_060 Hb_056196_060 Hb_053519_010--Hb_056196_060 Hb_001329_080 Hb_001329_080 Hb_053519_010--Hb_001329_080 Hb_004724_330 Hb_004724_330 Hb_053519_010--Hb_004724_330 Hb_053519_010--Hb_001246_160 Hb_006615_160 Hb_006615_160 Hb_053519_010--Hb_006615_160 Hb_000445_100 Hb_000445_100 Hb_001769_110--Hb_000445_100 Hb_007253_010 Hb_007253_010 Hb_001769_110--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_001769_110--Hb_000749_070 Hb_159809_050 Hb_159809_050 Hb_001769_110--Hb_159809_050 Hb_001769_110--Hb_015026_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0294452 0.189082 0.160003 0.142265 0.0254481 0.0261418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0298981 0.0235221 0 0.0656902 0

CAGE analysis