Hb_007138_030

Information

Type -
Description -
Location Contig7138: 39790-41057
Sequence    

Annotation

kegg
ID rcu:RCOM_1330160
description TMV resistance protein N, putative
nr
ID XP_012079709.1
description PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
swissprot
ID Q9XGM3
description Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=1 SV=1
trembl
ID B9S6Z6
description TMV resistance protein N, putative OS=Ricinus communis GN=RCOM_1330160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55402: 39638-40589
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007138_030 0.0 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
2 Hb_005784_060 0.1171113139 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
3 Hb_009545_030 0.1394476896 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
4 Hb_080477_080 0.143282509 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
5 Hb_000749_160 0.1461245017 - - calmodulin binding protein, putative [Ricinus communis]
6 Hb_158092_040 0.1479142201 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
7 Hb_179960_010 0.1497322012 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
8 Hb_042509_020 0.1501165797 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
9 Hb_007416_290 0.1520421506 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
10 Hb_002025_050 0.1535694836 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004324_030 0.1560033149 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
12 Hb_001159_170 0.1584277037 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
13 Hb_000956_070 0.1587192439 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
14 Hb_005813_010 0.1635845159 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_003964_060 0.1658430319 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
16 Hb_002592_050 0.1682654031 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
17 Hb_164117_010 0.1705672664 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
18 Hb_008727_040 0.1718143355 - - conserved hypothetical protein [Ricinus communis]
19 Hb_029866_080 0.1734110925 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
20 Hb_000165_200 0.1734392904 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007138_030 Hb_007138_030 Hb_005784_060 Hb_005784_060 Hb_007138_030--Hb_005784_060 Hb_009545_030 Hb_009545_030 Hb_007138_030--Hb_009545_030 Hb_080477_080 Hb_080477_080 Hb_007138_030--Hb_080477_080 Hb_000749_160 Hb_000749_160 Hb_007138_030--Hb_000749_160 Hb_158092_040 Hb_158092_040 Hb_007138_030--Hb_158092_040 Hb_179960_010 Hb_179960_010 Hb_007138_030--Hb_179960_010 Hb_000003_110 Hb_000003_110 Hb_005784_060--Hb_000003_110 Hb_000975_200 Hb_000975_200 Hb_005784_060--Hb_000975_200 Hb_000997_240 Hb_000997_240 Hb_005784_060--Hb_000997_240 Hb_005784_060--Hb_179960_010 Hb_005000_280 Hb_005000_280 Hb_005784_060--Hb_005000_280 Hb_007416_290 Hb_007416_290 Hb_009545_030--Hb_007416_290 Hb_008143_040 Hb_008143_040 Hb_009545_030--Hb_008143_040 Hb_001159_170 Hb_001159_170 Hb_009545_030--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_009545_030--Hb_004324_030 Hb_007134_030 Hb_007134_030 Hb_009545_030--Hb_007134_030 Hb_003710_020 Hb_003710_020 Hb_080477_080--Hb_003710_020 Hb_080477_080--Hb_158092_040 Hb_004522_030 Hb_004522_030 Hb_080477_080--Hb_004522_030 Hb_143766_080 Hb_143766_080 Hb_080477_080--Hb_143766_080 Hb_001054_090 Hb_001054_090 Hb_080477_080--Hb_001054_090 Hb_000062_530 Hb_000062_530 Hb_080477_080--Hb_000062_530 Hb_009615_030 Hb_009615_030 Hb_000749_160--Hb_009615_030 Hb_003964_060 Hb_003964_060 Hb_000749_160--Hb_003964_060 Hb_000676_170 Hb_000676_170 Hb_000749_160--Hb_000676_170 Hb_008727_040 Hb_008727_040 Hb_000749_160--Hb_008727_040 Hb_005144_080 Hb_005144_080 Hb_000749_160--Hb_005144_080 Hb_002580_020 Hb_002580_020 Hb_000749_160--Hb_002580_020 Hb_006615_230 Hb_006615_230 Hb_158092_040--Hb_006615_230 Hb_001119_070 Hb_001119_070 Hb_158092_040--Hb_001119_070 Hb_005333_080 Hb_005333_080 Hb_158092_040--Hb_005333_080 Hb_158092_040--Hb_004522_030 Hb_134014_010 Hb_134014_010 Hb_158092_040--Hb_134014_010 Hb_012395_050 Hb_012395_050 Hb_179960_010--Hb_012395_050 Hb_001178_090 Hb_001178_090 Hb_179960_010--Hb_001178_090 Hb_002203_020 Hb_002203_020 Hb_179960_010--Hb_002203_020 Hb_179960_010--Hb_158092_040 Hb_155444_010 Hb_155444_010 Hb_179960_010--Hb_155444_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0784803 0.774705 0.917918 5.00665 0.0196756 0.0420678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0897298 0.176446 0.261405 2.88859 1.01743

CAGE analysis