Hb_007140_020

Information

Type -
Description -
Location Contig7140: 41870-43602
Sequence    

Annotation

kegg
ID cic:CICLE_v10008419mg
description hypothetical protein
nr
ID XP_006450846.1
description hypothetical protein CICLE_v10008419mg [Citrus clementina]
swissprot
ID O04089
description Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1
trembl
ID A0A067GN57
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014759mg PE=4 SV=1
Gene Ontology
ID GO:0030659
description zinc transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55430: 43035-43267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007140_020 0.0 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
2 Hb_000035_430 0.1001414152 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Jatropha curcas]
3 Hb_000012_130 0.1091267301 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
4 Hb_004738_010 0.1129640067 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
5 Hb_000188_130 0.1141726733 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
6 Hb_001687_040 0.1237945314 - - actin-depolymerizing factor [Hevea brasiliensis]
7 Hb_001135_080 0.1248195203 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
8 Hb_003125_150 0.1254783169 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
9 Hb_001439_170 0.1258066821 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
10 Hb_001912_010 0.1270247672 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
11 Hb_002234_070 0.1274533795 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
12 Hb_002027_400 0.1279316728 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
13 Hb_121089_070 0.1286134119 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
14 Hb_000922_170 0.1297097653 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
15 Hb_002119_120 0.1298754518 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
16 Hb_000027_150 0.1304331119 - - mitochondrial carrier protein, putative [Ricinus communis]
17 Hb_002759_230 0.1309055524 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
18 Hb_000907_090 0.1318646589 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_010172_070 0.1321931659 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
20 Hb_000046_260 0.1324841237 - - acyl carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007140_020 Hb_007140_020 Hb_000035_430 Hb_000035_430 Hb_007140_020--Hb_000035_430 Hb_000012_130 Hb_000012_130 Hb_007140_020--Hb_000012_130 Hb_004738_010 Hb_004738_010 Hb_007140_020--Hb_004738_010 Hb_000188_130 Hb_000188_130 Hb_007140_020--Hb_000188_130 Hb_001687_040 Hb_001687_040 Hb_007140_020--Hb_001687_040 Hb_001135_080 Hb_001135_080 Hb_007140_020--Hb_001135_080 Hb_000191_020 Hb_000191_020 Hb_000035_430--Hb_000191_020 Hb_000035_430--Hb_001687_040 Hb_001604_030 Hb_001604_030 Hb_000035_430--Hb_001604_030 Hb_000027_150 Hb_000027_150 Hb_000035_430--Hb_000027_150 Hb_000035_430--Hb_000012_130 Hb_024714_060 Hb_024714_060 Hb_000012_130--Hb_024714_060 Hb_001439_170 Hb_001439_170 Hb_000012_130--Hb_001439_170 Hb_007594_120 Hb_007594_120 Hb_000012_130--Hb_007594_120 Hb_002027_400 Hb_002027_400 Hb_000012_130--Hb_002027_400 Hb_002759_230 Hb_002759_230 Hb_000012_130--Hb_002759_230 Hb_001160_030 Hb_001160_030 Hb_000012_130--Hb_001160_030 Hb_002119_120 Hb_002119_120 Hb_004738_010--Hb_002119_120 Hb_001863_480 Hb_001863_480 Hb_004738_010--Hb_001863_480 Hb_000907_090 Hb_000907_090 Hb_004738_010--Hb_000907_090 Hb_004738_010--Hb_001439_170 Hb_001711_030 Hb_001711_030 Hb_004738_010--Hb_001711_030 Hb_000032_040 Hb_000032_040 Hb_004738_010--Hb_000032_040 Hb_001341_130 Hb_001341_130 Hb_000188_130--Hb_001341_130 Hb_000045_190 Hb_000045_190 Hb_000188_130--Hb_000045_190 Hb_000188_130--Hb_002759_230 Hb_001153_080 Hb_001153_080 Hb_000188_130--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000188_130--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000188_130--Hb_002529_100 Hb_006573_220 Hb_006573_220 Hb_001687_040--Hb_006573_220 Hb_002097_060 Hb_002097_060 Hb_001687_040--Hb_002097_060 Hb_001191_090 Hb_001191_090 Hb_001687_040--Hb_001191_090 Hb_000069_100 Hb_000069_100 Hb_001687_040--Hb_000069_100 Hb_000272_070 Hb_000272_070 Hb_001687_040--Hb_000272_070 Hb_003053_030 Hb_003053_030 Hb_001687_040--Hb_003053_030 Hb_001105_070 Hb_001105_070 Hb_001135_080--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_001135_080--Hb_000496_060 Hb_007926_060 Hb_007926_060 Hb_001135_080--Hb_007926_060 Hb_001882_070 Hb_001882_070 Hb_001135_080--Hb_001882_070 Hb_005433_040 Hb_005433_040 Hb_001135_080--Hb_005433_040 Hb_002234_070 Hb_002234_070 Hb_001135_080--Hb_002234_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.5416 11.8407 18.773 34.7204 24.1996 23.0968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
147.413 104.341 77.3246 22.2573 13.6848

CAGE analysis