Hb_007144_010

Information

Type -
Description -
Location Contig7144: 24848-26089
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007144_010 0.0 - - -
2 Hb_001269_040 0.191646923 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_005157_010 0.1958437817 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
4 Hb_025194_010 0.1989837995 - - PREDICTED: uncharacterized protein LOC105644857 [Jatropha curcas]
5 Hb_003175_020 0.2099536167 - - homeobox protein knotted-1, putative [Ricinus communis]
6 Hb_002760_030 0.219621425 transcription factor TF Family: PLATZ hypothetical protein JCGZ_16980 [Jatropha curcas]
7 Hb_133636_010 0.2216269855 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
8 Hb_003384_070 0.2265847681 - - PREDICTED: methylesterase 17-like [Populus euphratica]
9 Hb_007481_020 0.2275890027 - - -
10 Hb_005841_080 0.2277355183 - - hypothetical protein POPTR_0018s11370g [Populus trichocarpa]
11 Hb_001635_050 0.2277938932 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
12 Hb_141142_010 0.2295108642 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
13 Hb_003371_120 0.238331096 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
14 Hb_001338_050 0.238930391 - - hypothetical protein POPTR_0016s05400g [Populus trichocarpa]
15 Hb_001951_030 0.2459285726 - - hypothetical protein JCGZ_04584 [Jatropha curcas]
16 Hb_003299_010 0.2494433343 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
17 Hb_002686_280 0.2519196111 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_000106_070 0.2530863511 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
19 Hb_000315_030 0.2539806558 - - carbohydrate binding protein, putative [Ricinus communis]
20 Hb_010261_010 0.2549566935 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007144_010 Hb_007144_010 Hb_001269_040 Hb_001269_040 Hb_007144_010--Hb_001269_040 Hb_005157_010 Hb_005157_010 Hb_007144_010--Hb_005157_010 Hb_025194_010 Hb_025194_010 Hb_007144_010--Hb_025194_010 Hb_003175_020 Hb_003175_020 Hb_007144_010--Hb_003175_020 Hb_002760_030 Hb_002760_030 Hb_007144_010--Hb_002760_030 Hb_133636_010 Hb_133636_010 Hb_007144_010--Hb_133636_010 Hb_002686_280 Hb_002686_280 Hb_001269_040--Hb_002686_280 Hb_002273_080 Hb_002273_080 Hb_001269_040--Hb_002273_080 Hb_002273_050 Hb_002273_050 Hb_001269_040--Hb_002273_050 Hb_012404_040 Hb_012404_040 Hb_001269_040--Hb_012404_040 Hb_001338_050 Hb_001338_050 Hb_001269_040--Hb_001338_050 Hb_001269_040--Hb_025194_010 Hb_003299_010 Hb_003299_010 Hb_005157_010--Hb_003299_010 Hb_005841_080 Hb_005841_080 Hb_005157_010--Hb_005841_080 Hb_000685_060 Hb_000685_060 Hb_005157_010--Hb_000685_060 Hb_001951_030 Hb_001951_030 Hb_005157_010--Hb_001951_030 Hb_003504_040 Hb_003504_040 Hb_005157_010--Hb_003504_040 Hb_005157_010--Hb_133636_010 Hb_025194_010--Hb_003175_020 Hb_025194_010--Hb_001338_050 Hb_006738_060 Hb_006738_060 Hb_025194_010--Hb_006738_060 Hb_141142_010 Hb_141142_010 Hb_025194_010--Hb_141142_010 Hb_124302_030 Hb_124302_030 Hb_003175_020--Hb_124302_030 Hb_003175_020--Hb_141142_010 Hb_003175_020--Hb_133636_010 Hb_101089_010 Hb_101089_010 Hb_003175_020--Hb_101089_010 Hb_007729_010 Hb_007729_010 Hb_002760_030--Hb_007729_010 Hb_021901_010 Hb_021901_010 Hb_002760_030--Hb_021901_010 Hb_001545_220 Hb_001545_220 Hb_002760_030--Hb_001545_220 Hb_001269_020 Hb_001269_020 Hb_002760_030--Hb_001269_020 Hb_002677_010 Hb_002677_010 Hb_002760_030--Hb_002677_010 Hb_001073_020 Hb_001073_020 Hb_002760_030--Hb_001073_020 Hb_133636_010--Hb_003299_010 Hb_000844_010 Hb_000844_010 Hb_133636_010--Hb_000844_010 Hb_002783_320 Hb_002783_320 Hb_133636_010--Hb_002783_320 Hb_011909_030 Hb_011909_030 Hb_133636_010--Hb_011909_030 Hb_007773_030 Hb_007773_030 Hb_133636_010--Hb_007773_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.379694 1.86543 0.0236801 0.107989 0.20071 0.259216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0682791 0 0 1.19554 0

CAGE analysis