Hb_007153_050

Information

Type -
Description -
Location Contig7153: 33663-38224
Sequence    

Annotation

kegg
ID rcu:RCOM_0623320
description Endosomal P24A protein precursor, putative
nr
ID XP_012071510.1
description PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
swissprot
ID F4KIB2
description Transmembrane 9 superfamily member 8 OS=Arabidopsis thaliana GN=TMN8 PE=2 SV=1
trembl
ID A0A067KR36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04034 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane 9 superfamily member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55434: 33739-38216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007153_050 0.0 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
2 Hb_000679_230 0.0724304519 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
3 Hb_001946_180 0.1100286425 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001018_110 0.1137447718 - - unnamed protein product [Coffea canephora]
5 Hb_002289_060 0.1142011515 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000409_030 0.115901789 - - PREDICTED: uncharacterized protein LOC105642693 [Jatropha curcas]
7 Hb_002631_070 0.1162755805 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
8 Hb_001440_020 0.1203541532 - - exocyst componenet sec8, putative [Ricinus communis]
9 Hb_003052_180 0.1206799642 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
10 Hb_001916_090 0.1213509659 - - beta-1,2-n-acetylglucosaminyltransferase II, putative [Ricinus communis]
11 Hb_003097_140 0.1226001653 - - PREDICTED: glycosyltransferase-like KOBITO 1 [Jatropha curcas]
12 Hb_000984_310 0.1232505656 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
13 Hb_001195_470 0.123464355 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
14 Hb_002226_080 0.1244252641 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
15 Hb_000062_540 0.1247858539 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001491_030 0.1259688471 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
17 Hb_007765_040 0.1261773177 - - Cytosolic enolase isoform 3 [Theobroma cacao]
18 Hb_027337_100 0.1287562621 - - Putative phagocytic receptor 1b [Gossypium arboreum]
19 Hb_003529_030 0.1288018023 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
20 Hb_000237_040 0.129540237 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]

Gene co-expression network

sample Hb_007153_050 Hb_007153_050 Hb_000679_230 Hb_000679_230 Hb_007153_050--Hb_000679_230 Hb_001946_180 Hb_001946_180 Hb_007153_050--Hb_001946_180 Hb_001018_110 Hb_001018_110 Hb_007153_050--Hb_001018_110 Hb_002289_060 Hb_002289_060 Hb_007153_050--Hb_002289_060 Hb_000409_030 Hb_000409_030 Hb_007153_050--Hb_000409_030 Hb_002631_070 Hb_002631_070 Hb_007153_050--Hb_002631_070 Hb_000679_230--Hb_002289_060 Hb_000679_230--Hb_001946_180 Hb_001842_010 Hb_001842_010 Hb_000679_230--Hb_001842_010 Hb_003052_180 Hb_003052_180 Hb_000679_230--Hb_003052_180 Hb_003911_020 Hb_003911_020 Hb_000679_230--Hb_003911_020 Hb_001946_180--Hb_002289_060 Hb_012651_010 Hb_012651_010 Hb_001946_180--Hb_012651_010 Hb_001946_180--Hb_001842_010 Hb_000049_020 Hb_000049_020 Hb_001946_180--Hb_000049_020 Hb_138585_080 Hb_138585_080 Hb_001946_180--Hb_138585_080 Hb_002226_080 Hb_002226_080 Hb_001946_180--Hb_002226_080 Hb_000300_630 Hb_000300_630 Hb_001018_110--Hb_000300_630 Hb_005023_010 Hb_005023_010 Hb_001018_110--Hb_005023_010 Hb_001018_130 Hb_001018_130 Hb_001018_110--Hb_001018_130 Hb_044736_010 Hb_044736_010 Hb_001018_110--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_001018_110--Hb_003994_280 Hb_072922_010 Hb_072922_010 Hb_001018_110--Hb_072922_010 Hb_000062_540 Hb_000062_540 Hb_002289_060--Hb_000062_540 Hb_001157_230 Hb_001157_230 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_001916_090 Hb_001916_090 Hb_002289_060--Hb_001916_090 Hb_034585_010 Hb_034585_010 Hb_002289_060--Hb_034585_010 Hb_004679_030 Hb_004679_030 Hb_000409_030--Hb_004679_030 Hb_000941_150 Hb_000941_150 Hb_000409_030--Hb_000941_150 Hb_002768_060 Hb_002768_060 Hb_000409_030--Hb_002768_060 Hb_000976_100 Hb_000976_100 Hb_000409_030--Hb_000976_100 Hb_009296_080 Hb_009296_080 Hb_000409_030--Hb_009296_080 Hb_012114_100 Hb_012114_100 Hb_000409_030--Hb_012114_100 Hb_001640_030 Hb_001640_030 Hb_002631_070--Hb_001640_030 Hb_002631_070--Hb_003994_280 Hb_009851_050 Hb_009851_050 Hb_002631_070--Hb_009851_050 Hb_000579_240 Hb_000579_240 Hb_002631_070--Hb_000579_240 Hb_000004_030 Hb_000004_030 Hb_002631_070--Hb_000004_030 Hb_004680_120 Hb_004680_120 Hb_002631_070--Hb_004680_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2068 46.4927 23.2299 143.509 41.4772 71.6136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.2636 23.4791 67.5035 45.725 79.1212

CAGE analysis