Hb_007157_060

Information

Type -
Description -
Location Contig7157: 94211-96866
Sequence    

Annotation

kegg
ID rcu:RCOM_0711510
description Xylem serine proteinase 1 precursor, putative (EC:3.4.21.25)
nr
ID XP_012077058.1
description PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID A0A067KCQ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07493 PE=4 SV=1
Gene Ontology
ID GO:0005794
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55442: 94138-96970
cDNA
(Sanger)
(ID:Location)		 028_K02.ab1: 96428-96970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007157_060 0.0 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
2 Hb_065841_010 0.1353418458 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
3 Hb_006483_030 0.1455732511 - - Cucumisin precursor, putative [Ricinus communis]
4 Hb_007749_010 0.1512849373 - - -
5 Hb_145317_010 0.1918609141 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
6 Hb_000181_290 0.1969963421 - - hypothetical protein POPTR_0001s41000g [Populus trichocarpa]
7 Hb_000818_100 0.1989217166 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
8 Hb_008054_050 0.199495822 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
9 Hb_000438_150 0.2052934056 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
10 Hb_186857_010 0.2075223611 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_005843_160 0.2113899227 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
12 Hb_010531_050 0.2120645185 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
13 Hb_000030_240 0.2130603213 - - zinc finger protein, putative [Ricinus communis]
14 Hb_004355_040 0.2145417702 - - epoxide hydrolase, putative [Ricinus communis]
15 Hb_002213_040 0.2166813076 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
16 Hb_001103_070 0.2203378194 - - Patellin-3, putative [Ricinus communis]
17 Hb_161994_040 0.2217630803 - - -
18 Hb_000630_030 0.2232121864 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
19 Hb_002192_030 0.2237366956 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005504_020 0.2248943467 - - -

Gene co-expression network

sample Hb_007157_060 Hb_007157_060 Hb_065841_010 Hb_065841_010 Hb_007157_060--Hb_065841_010 Hb_006483_030 Hb_006483_030 Hb_007157_060--Hb_006483_030 Hb_007749_010 Hb_007749_010 Hb_007157_060--Hb_007749_010 Hb_145317_010 Hb_145317_010 Hb_007157_060--Hb_145317_010 Hb_000181_290 Hb_000181_290 Hb_007157_060--Hb_000181_290 Hb_000818_100 Hb_000818_100 Hb_007157_060--Hb_000818_100 Hb_013358_100 Hb_013358_100 Hb_065841_010--Hb_013358_100 Hb_008054_050 Hb_008054_050 Hb_065841_010--Hb_008054_050 Hb_068569_010 Hb_068569_010 Hb_065841_010--Hb_068569_010 Hb_161994_040 Hb_161994_040 Hb_065841_010--Hb_161994_040 Hb_177152_010 Hb_177152_010 Hb_065841_010--Hb_177152_010 Hb_005504_020 Hb_005504_020 Hb_006483_030--Hb_005504_020 Hb_000500_080 Hb_000500_080 Hb_006483_030--Hb_000500_080 Hb_006483_030--Hb_065841_010 Hb_001103_070 Hb_001103_070 Hb_006483_030--Hb_001103_070 Hb_006483_030--Hb_008054_050 Hb_007749_010--Hb_000818_100 Hb_007749_010--Hb_065841_010 Hb_005843_160 Hb_005843_160 Hb_007749_010--Hb_005843_160 Hb_000091_060 Hb_000091_060 Hb_007749_010--Hb_000091_060 Hb_007749_010--Hb_000181_290 Hb_145317_010--Hb_008054_050 Hb_009247_010 Hb_009247_010 Hb_145317_010--Hb_009247_010 Hb_106688_010 Hb_106688_010 Hb_145317_010--Hb_106688_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200 Hb_004611_030 Hb_004611_030 Hb_000181_290--Hb_004611_030 Hb_073171_090 Hb_073171_090 Hb_000181_290--Hb_073171_090 Hb_083628_010 Hb_083628_010 Hb_000181_290--Hb_083628_010 Hb_009222_070 Hb_009222_070 Hb_000181_290--Hb_009222_070 Hb_030736_060 Hb_030736_060 Hb_000181_290--Hb_030736_060 Hb_003910_010 Hb_003910_010 Hb_000181_290--Hb_003910_010 Hb_029695_050 Hb_029695_050 Hb_000818_100--Hb_029695_050 Hb_000818_100--Hb_009247_010 Hb_000818_100--Hb_009222_070 Hb_000503_020 Hb_000503_020 Hb_000818_100--Hb_000503_020 Hb_000098_050 Hb_000098_050 Hb_000818_100--Hb_000098_050 Hb_000134_120 Hb_000134_120 Hb_000818_100--Hb_000134_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.3511 45.6676 29.0411 116.708 40.9784 34.4333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.99979 0.857648 2.54434 32.8041 7.49795

CAGE analysis