Hb_007163_070

Information

Type -
Description -
Location Contig7163: 121843-134747
Sequence    

Annotation

kegg
ID rcu:RCOM_0188130
description tRNA-dihydrouridine synthase, putative
nr
ID XP_012082133.1
description PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
swissprot
ID Q9NX74
description tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2 PE=1 SV=1
trembl
ID A0A067KB11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18371 PE=4 SV=1
Gene Ontology
ID GO:0017150
description trna-dihydrouridine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55464: 121836-134849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_070 0.0 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
2 Hb_005697_060 0.0451247959 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
3 Hb_001662_150 0.0653593352 - - Scaffold attachment factor B1 [Medicago truncatula]
4 Hb_000465_090 0.0702460083 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
5 Hb_028227_020 0.0730437621 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
6 Hb_003942_020 0.0738930432 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
7 Hb_002534_150 0.0771676199 - - catalytic, putative [Ricinus communis]
8 Hb_002739_050 0.0794835728 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
9 Hb_001157_020 0.0801644204 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
10 Hb_000342_130 0.0811692963 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
11 Hb_032264_070 0.0823118841 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
12 Hb_007632_030 0.083053986 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
13 Hb_009694_010 0.0837324697 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000120_790 0.0838806107 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
15 Hb_003125_120 0.0845686548 - - PREDICTED: TITAN-like protein [Jatropha curcas]
16 Hb_005847_060 0.0855965664 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
17 Hb_006120_070 0.0858819485 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
18 Hb_003226_140 0.086490478 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
19 Hb_002253_100 0.0866912579 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
20 Hb_008554_060 0.087623403 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_007163_070 Hb_007163_070 Hb_005697_060 Hb_005697_060 Hb_007163_070--Hb_005697_060 Hb_001662_150 Hb_001662_150 Hb_007163_070--Hb_001662_150 Hb_000465_090 Hb_000465_090 Hb_007163_070--Hb_000465_090 Hb_028227_020 Hb_028227_020 Hb_007163_070--Hb_028227_020 Hb_003942_020 Hb_003942_020 Hb_007163_070--Hb_003942_020 Hb_002534_150 Hb_002534_150 Hb_007163_070--Hb_002534_150 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_005697_060--Hb_028227_020 Hb_005697_060--Hb_000465_090 Hb_005697_060--Hb_001662_150 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120 Hb_003226_140 Hb_003226_140 Hb_001662_150--Hb_003226_140 Hb_000329_200 Hb_000329_200 Hb_001662_150--Hb_000329_200 Hb_001157_020 Hb_001157_020 Hb_001662_150--Hb_001157_020 Hb_005306_170 Hb_005306_170 Hb_001662_150--Hb_005306_170 Hb_001012_010 Hb_001012_010 Hb_000465_090--Hb_001012_010 Hb_009694_010 Hb_009694_010 Hb_000465_090--Hb_009694_010 Hb_002477_300 Hb_002477_300 Hb_000465_090--Hb_002477_300 Hb_146673_010 Hb_146673_010 Hb_000465_090--Hb_146673_010 Hb_028227_020--Hb_001157_020 Hb_028227_020--Hb_009694_010 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_008554_060 Hb_008554_060 Hb_003942_020--Hb_008554_060 Hb_011512_070 Hb_011512_070 Hb_003942_020--Hb_011512_070 Hb_189216_020 Hb_189216_020 Hb_003942_020--Hb_189216_020 Hb_000529_030 Hb_000529_030 Hb_003942_020--Hb_000529_030 Hb_003942_020--Hb_146673_010 Hb_001828_060 Hb_001828_060 Hb_002534_150--Hb_001828_060 Hb_005725_250 Hb_005725_250 Hb_002534_150--Hb_005725_250 Hb_002534_150--Hb_001534_120 Hb_000059_370 Hb_000059_370 Hb_002534_150--Hb_000059_370 Hb_002534_150--Hb_005697_060 Hb_004116_190 Hb_004116_190 Hb_002534_150--Hb_004116_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.14435 2.44511 4.62468 2.9388 5.47918 5.11882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94124 7.84829 3.45662 3.8222 4.7015

CAGE analysis