Hb_007163_080

Information

Type -
Description -
Location Contig7163: 140136-145713
Sequence    

Annotation

kegg
ID rcu:RCOM_0188120
description Phosphoenolpyruvate carboxykinase [ATP], putative (EC:4.1.1.49)
nr
ID XP_012079510.1
description PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
swissprot
ID Q9T074
description Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1
trembl
ID A0A067K7R3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12613 PE=3 SV=1
Gene Ontology
ID GO:0004612
description phosphoenolpyruvate carboxykinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55466: 140123-145706 , PASA_asmbl_55467: 140652-141030 , PASA_asmbl_55468: 143858-145705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_080 0.0 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
2 Hb_005375_060 0.1434534998 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
3 Hb_002151_130 0.1458918489 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
4 Hb_011622_010 0.1493298893 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
5 Hb_061908_030 0.1791560757 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
6 Hb_003751_100 0.1878350414 - - Amino acid permease 2 [Glycine soja]
7 Hb_183192_010 0.1926092263 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
8 Hb_000984_290 0.1995698796 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
9 Hb_001141_200 0.2002654498 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
10 Hb_002965_070 0.2023383883 - - PREDICTED: extensin [Jatropha curcas]
11 Hb_047442_010 0.2075643157 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
12 Hb_001007_090 0.20761675 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
13 Hb_004495_010 0.2085915432 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
14 Hb_002095_030 0.2090128425 - - hypothetical protein MIMGU_mgv1a021906mg, partial [Erythranthe guttata]
15 Hb_104641_010 0.2092839697 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
16 Hb_158111_010 0.2099596718 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
17 Hb_009979_010 0.2105665277 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_000521_190 0.2109285567 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
19 Hb_004586_130 0.2110873683 - - conserved hypothetical protein [Ricinus communis]
20 Hb_027445_040 0.213402801 - - PREDICTED: uncharacterized protein LOC105117996 [Populus euphratica]

Gene co-expression network

sample Hb_007163_080 Hb_007163_080 Hb_005375_060 Hb_005375_060 Hb_007163_080--Hb_005375_060 Hb_002151_130 Hb_002151_130 Hb_007163_080--Hb_002151_130 Hb_011622_010 Hb_011622_010 Hb_007163_080--Hb_011622_010 Hb_061908_030 Hb_061908_030 Hb_007163_080--Hb_061908_030 Hb_003751_100 Hb_003751_100 Hb_007163_080--Hb_003751_100 Hb_183192_010 Hb_183192_010 Hb_007163_080--Hb_183192_010 Hb_001581_040 Hb_001581_040 Hb_005375_060--Hb_001581_040 Hb_002045_260 Hb_002045_260 Hb_005375_060--Hb_002045_260 Hb_000462_080 Hb_000462_080 Hb_005375_060--Hb_000462_080 Hb_005375_060--Hb_011622_010 Hb_042098_010 Hb_042098_010 Hb_005375_060--Hb_042098_010 Hb_004586_130 Hb_004586_130 Hb_002151_130--Hb_004586_130 Hb_124677_020 Hb_124677_020 Hb_002151_130--Hb_124677_020 Hb_000984_290 Hb_000984_290 Hb_002151_130--Hb_000984_290 Hb_002151_130--Hb_061908_030 Hb_010126_030 Hb_010126_030 Hb_002151_130--Hb_010126_030 Hb_002876_070 Hb_002876_070 Hb_002151_130--Hb_002876_070 Hb_006478_140 Hb_006478_140 Hb_011622_010--Hb_006478_140 Hb_000604_080 Hb_000604_080 Hb_011622_010--Hb_000604_080 Hb_104641_010 Hb_104641_010 Hb_011622_010--Hb_104641_010 Hb_002374_360 Hb_002374_360 Hb_011622_010--Hb_002374_360 Hb_061908_030--Hb_010126_030 Hb_000451_040 Hb_000451_040 Hb_061908_030--Hb_000451_040 Hb_061908_030--Hb_000984_290 Hb_061908_030--Hb_004586_130 Hb_002960_100 Hb_002960_100 Hb_061908_030--Hb_002960_100 Hb_003751_100--Hb_005375_060 Hb_003751_050 Hb_003751_050 Hb_003751_100--Hb_003751_050 Hb_003751_100--Hb_002045_260 Hb_003751_100--Hb_011622_010 Hb_003751_100--Hb_002374_360 Hb_009979_010 Hb_009979_010 Hb_183192_010--Hb_009979_010 Hb_004495_010 Hb_004495_010 Hb_183192_010--Hb_004495_010 Hb_001628_020 Hb_001628_020 Hb_183192_010--Hb_001628_020 Hb_001369_670 Hb_001369_670 Hb_183192_010--Hb_001369_670 Hb_029689_010 Hb_029689_010 Hb_183192_010--Hb_029689_010 Hb_012022_020 Hb_012022_020 Hb_183192_010--Hb_012022_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12237 17.0171 23.2882 4.1052 0.36155 1.13698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.693161 0.855 0.0280702 4.14035 0.18777

CAGE analysis