Hb_007163_090

Information

Type -
Description -
Location Contig7163: 157990-163773
Sequence    

Annotation

kegg
ID rcu:RCOM_0188240
description hypothetical protein
nr
ID XP_012079508.1
description PREDICTED: protein spt2-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIR3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12611 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55469: 157976-163728 , PASA_asmbl_55470: 160204-160311
cDNA
(Sanger)
(ID:Location)		 040_I01.ab1: 158010-160910

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_090 0.0 - - PREDICTED: protein spt2-like [Jatropha curcas]
2 Hb_001226_030 0.0484101121 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 [Jatropha curcas]
3 Hb_001301_200 0.0522929594 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
4 Hb_000207_390 0.0558108725 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
5 Hb_000577_010 0.0560169417 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
6 Hb_123352_020 0.0565084609 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560 [Jatropha curcas]
7 Hb_001797_050 0.057874027 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
8 Hb_001143_160 0.0632882492 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
9 Hb_004447_060 0.0670937642 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
10 Hb_004724_060 0.0672174504 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
11 Hb_023344_030 0.0675903005 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
12 Hb_000820_170 0.0708287684 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
13 Hb_001663_030 0.0725348747 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
14 Hb_006332_010 0.0743866248 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
15 Hb_004032_150 0.0744137469 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
16 Hb_000803_190 0.0750455182 - - PREDICTED: THUMP domain-containing protein 1 isoform X1 [Jatropha curcas]
17 Hb_004837_040 0.0751892882 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
18 Hb_181235_010 0.0753167729 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
19 Hb_000062_240 0.0766359226 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
20 Hb_000487_290 0.0767062951 - - ribonucleic acid binding protein S1, putative [Ricinus communis]

Gene co-expression network

sample Hb_007163_090 Hb_007163_090 Hb_001226_030 Hb_001226_030 Hb_007163_090--Hb_001226_030 Hb_001301_200 Hb_001301_200 Hb_007163_090--Hb_001301_200 Hb_000207_390 Hb_000207_390 Hb_007163_090--Hb_000207_390 Hb_000577_010 Hb_000577_010 Hb_007163_090--Hb_000577_010 Hb_123352_020 Hb_123352_020 Hb_007163_090--Hb_123352_020 Hb_001797_050 Hb_001797_050 Hb_007163_090--Hb_001797_050 Hb_001226_030--Hb_123352_020 Hb_000768_040 Hb_000768_040 Hb_001226_030--Hb_000768_040 Hb_001226_030--Hb_000577_010 Hb_000487_290 Hb_000487_290 Hb_001226_030--Hb_000487_290 Hb_004724_060 Hb_004724_060 Hb_001226_030--Hb_004724_060 Hb_023344_030 Hb_023344_030 Hb_001301_200--Hb_023344_030 Hb_004724_200 Hb_004724_200 Hb_001301_200--Hb_004724_200 Hb_004447_060 Hb_004447_060 Hb_001301_200--Hb_004447_060 Hb_001680_010 Hb_001680_010 Hb_001301_200--Hb_001680_010 Hb_048937_040 Hb_048937_040 Hb_001301_200--Hb_048937_040 Hb_000207_390--Hb_001797_050 Hb_002200_130 Hb_002200_130 Hb_000207_390--Hb_002200_130 Hb_002154_030 Hb_002154_030 Hb_000207_390--Hb_002154_030 Hb_000207_390--Hb_001301_200 Hb_000803_190 Hb_000803_190 Hb_000207_390--Hb_000803_190 Hb_000577_010--Hb_004724_060 Hb_001663_030 Hb_001663_030 Hb_000577_010--Hb_001663_030 Hb_003464_060 Hb_003464_060 Hb_000577_010--Hb_003464_060 Hb_000577_010--Hb_001797_050 Hb_001143_160 Hb_001143_160 Hb_123352_020--Hb_001143_160 Hb_123352_020--Hb_000487_290 Hb_000225_040 Hb_000225_040 Hb_123352_020--Hb_000225_040 Hb_005731_030 Hb_005731_030 Hb_123352_020--Hb_005731_030 Hb_000457_260 Hb_000457_260 Hb_123352_020--Hb_000457_260 Hb_001797_050--Hb_004724_060 Hb_009411_010 Hb_009411_010 Hb_001797_050--Hb_009411_010 Hb_004204_080 Hb_004204_080 Hb_001797_050--Hb_004204_080 Hb_001797_050--Hb_000803_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.873 35.5656 14.354 23.8702 42.2452 67.022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.765 31.6855 48.2971 31.6214 19.2894

CAGE analysis