Hb_007164_030

Information

Type transcription factor
Description TF Family: Orphans
Location Contig7164: 48783-50810
Sequence    

Annotation

kegg
ID rcu:RCOM_0158410
description two-component system sensor histidine kinase/response regulator, putative
nr
ID XP_002532588.1
description two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
swissprot
ID O80366
description Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1
trembl
ID B9T2W9
description Two-component system sensor histidine kinase/response regulator, putative OS=Ricinus communis GN=RCOM_0158410 PE=4 SV=1
Gene Ontology
ID GO:0000160
description two-component response regulator arr9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55482: 48785-50709
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007164_030 0.0 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
2 Hb_008248_020 0.1469511489 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
3 Hb_001376_010 0.1659422106 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
4 Hb_015807_030 0.1677684001 - - PREDICTED: protein NDR1-like [Jatropha curcas]
5 Hb_001699_230 0.1757832645 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
6 Hb_007793_050 0.1759686588 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011310_150 0.1774338145 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
8 Hb_000077_390 0.178699758 transcription factor TF Family: ERF hypothetical protein POPTR_0019s13330g [Populus trichocarpa]
9 Hb_004917_040 0.1827062001 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
10 Hb_002759_100 0.1844187264 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
11 Hb_000704_030 0.1845176497 - - PREDICTED: probable aquaporin SIP2-1 [Cicer arietinum]
12 Hb_001146_020 0.1858606526 - - hypothetical protein CISIN_1g013079mg [Citrus sinensis]
13 Hb_000711_010 0.1875650941 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
14 Hb_001381_060 0.1876248572 - - monoxygenase, putative [Ricinus communis]
15 Hb_000042_330 0.1876529644 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002774_200 0.1897925535 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
17 Hb_002349_030 0.1903733473 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002686_150 0.191155338 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_000035_050 0.1946445874 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
20 Hb_005714_100 0.1948222904 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]

Gene co-expression network

sample Hb_007164_030 Hb_007164_030 Hb_008248_020 Hb_008248_020 Hb_007164_030--Hb_008248_020 Hb_001376_010 Hb_001376_010 Hb_007164_030--Hb_001376_010 Hb_015807_030 Hb_015807_030 Hb_007164_030--Hb_015807_030 Hb_001699_230 Hb_001699_230 Hb_007164_030--Hb_001699_230 Hb_007793_050 Hb_007793_050 Hb_007164_030--Hb_007793_050 Hb_011310_150 Hb_011310_150 Hb_007164_030--Hb_011310_150 Hb_003849_190 Hb_003849_190 Hb_008248_020--Hb_003849_190 Hb_023344_110 Hb_023344_110 Hb_008248_020--Hb_023344_110 Hb_005714_100 Hb_005714_100 Hb_008248_020--Hb_005714_100 Hb_000035_050 Hb_000035_050 Hb_008248_020--Hb_000035_050 Hb_001133_010 Hb_001133_010 Hb_008248_020--Hb_001133_010 Hb_009862_020 Hb_009862_020 Hb_008248_020--Hb_009862_020 Hb_001376_010--Hb_000035_050 Hb_000638_280 Hb_000638_280 Hb_001376_010--Hb_000638_280 Hb_004117_170 Hb_004117_170 Hb_001376_010--Hb_004117_170 Hb_004108_240 Hb_004108_240 Hb_001376_010--Hb_004108_240 Hb_002965_050 Hb_002965_050 Hb_001376_010--Hb_002965_050 Hb_000156_090 Hb_000156_090 Hb_001376_010--Hb_000156_090 Hb_015807_030--Hb_000035_050 Hb_015807_030--Hb_004117_170 Hb_015807_030--Hb_001376_010 Hb_002450_030 Hb_002450_030 Hb_015807_030--Hb_002450_030 Hb_000042_330 Hb_000042_330 Hb_015807_030--Hb_000042_330 Hb_000046_310 Hb_000046_310 Hb_015807_030--Hb_000046_310 Hb_004128_030 Hb_004128_030 Hb_001699_230--Hb_004128_030 Hb_010661_010 Hb_010661_010 Hb_001699_230--Hb_010661_010 Hb_000152_330 Hb_000152_330 Hb_001699_230--Hb_000152_330 Hb_002217_090 Hb_002217_090 Hb_001699_230--Hb_002217_090 Hb_003747_210 Hb_003747_210 Hb_001699_230--Hb_003747_210 Hb_001699_230--Hb_001376_010 Hb_004003_030 Hb_004003_030 Hb_007793_050--Hb_004003_030 Hb_001268_340 Hb_001268_340 Hb_007793_050--Hb_001268_340 Hb_004032_160 Hb_004032_160 Hb_007793_050--Hb_004032_160 Hb_001148_060 Hb_001148_060 Hb_007793_050--Hb_001148_060 Hb_000030_160 Hb_000030_160 Hb_007793_050--Hb_000030_160 Hb_002903_100 Hb_002903_100 Hb_007793_050--Hb_002903_100 Hb_166876_010 Hb_166876_010 Hb_011310_150--Hb_166876_010 Hb_002774_200 Hb_002774_200 Hb_011310_150--Hb_002774_200 Hb_001160_100 Hb_001160_100 Hb_011310_150--Hb_001160_100 Hb_002259_170 Hb_002259_170 Hb_011310_150--Hb_002259_170 Hb_001269_370 Hb_001269_370 Hb_011310_150--Hb_001269_370 Hb_000506_110 Hb_000506_110 Hb_011310_150--Hb_000506_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.72995 16.2923 11.0637 13.0901 0.280313 1.05891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.99686 2.98662 2.83626 4.56578 7.51861

CAGE analysis