Hb_007166_050

Information

Type -
Description -
Location Contig7166: 97900-99835
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55497: 98998-99572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007166_050 0.0 - - -
2 Hb_003086_110 0.0546001292 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
3 Hb_000617_320 0.0582437018 - - 40S ribosomal protein S21B [Hevea brasiliensis]
4 Hb_001019_090 0.0621478092 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
5 Hb_118977_020 0.0677563277 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
6 Hb_001437_040 0.0754771454 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
7 Hb_000316_110 0.078700639 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
8 Hb_005611_010 0.0794246585 - - PREDICTED: protein prune homolog [Jatropha curcas]
9 Hb_004724_100 0.0849052058 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
10 Hb_004297_100 0.0859155614 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
11 Hb_034585_030 0.0865914249 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
12 Hb_000189_530 0.0867927666 - - 40S ribosomal protein S24B [Hevea brasiliensis]
13 Hb_006569_020 0.0879258973 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
14 Hb_000200_210 0.0893491965 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011161_040 0.0901080494 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
16 Hb_005686_110 0.0919946308 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
17 Hb_000089_130 0.0923975808 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
18 Hb_001047_010 0.0927476278 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000152_430 0.0931018384 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
20 Hb_134226_010 0.0936298383 - - 40S ribosomal protein S21e, putative [Ricinus communis]

Gene co-expression network

sample Hb_007166_050 Hb_007166_050 Hb_003086_110 Hb_003086_110 Hb_007166_050--Hb_003086_110 Hb_000617_320 Hb_000617_320 Hb_007166_050--Hb_000617_320 Hb_001019_090 Hb_001019_090 Hb_007166_050--Hb_001019_090 Hb_118977_020 Hb_118977_020 Hb_007166_050--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_007166_050--Hb_001437_040 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_003086_020 Hb_003086_020 Hb_003086_110--Hb_003086_020 Hb_003086_110--Hb_118977_020 Hb_000272_100 Hb_000272_100 Hb_003086_110--Hb_000272_100 Hb_003086_110--Hb_001437_040 Hb_003086_110--Hb_000617_320 Hb_000617_320--Hb_001019_090 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_000617_320--Hb_118977_020 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_118977_020--Hb_001019_090 Hb_118977_020--Hb_001437_040 Hb_157854_010 Hb_157854_010 Hb_118977_020--Hb_157854_010 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_098709_010 Hb_098709_010 Hb_001437_040--Hb_098709_010 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_000316_110--Hb_006569_020 Hb_000316_110--Hb_001019_090 Hb_009711_030 Hb_009711_030 Hb_000316_110--Hb_009711_030 Hb_159558_030 Hb_159558_030 Hb_000316_110--Hb_159558_030 Hb_022250_040 Hb_022250_040 Hb_000316_110--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.11358 0.636398 0.530894 1.10689 3.02424 4.9932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1152 4.86041 2.24905 1.27414 0.177491

CAGE analysis